Serratia nematodiphila: NLX84_24700
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Entry
NLX84_24700 CDS
T08619
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
snem
Serratia nematodiphila
Pathway
snem03030
DNA replication
snem03410
Base excision repair
snem03420
Nucleotide excision repair
snem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLX84_24700 (polA)
03410 Base excision repair
NLX84_24700 (polA)
03420 Nucleotide excision repair
NLX84_24700 (polA)
03440 Homologous recombination
NLX84_24700 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snem03032
]
NLX84_24700 (polA)
03400 DNA repair and recombination proteins [BR:
snem03400
]
NLX84_24700 (polA)
Enzymes [BR:
snem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NLX84_24700 (polA)
DNA replication proteins [BR:
snem03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NLX84_24700 (polA)
DNA repair and recombination proteins [BR:
snem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NLX84_24700 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLX84_24700 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
HHH_5
Unstab_antitox
Motif
Other DBs
NCBI-ProteinID:
UTO01495
LinkDB
All DBs
Position
complement(5195465..5198263)
Genome browser
AA seq
932 aa
AA seq
DB search
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAV
VFDAKGKTFRDDLFAEYKSHRPPMPDDLRAQIEPLHSMVKAMGLPLLVTPGVEADDVIGT
LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYGNLENIATLSFRGAKTMAAKLEQNK
EVAYLSYKLATIKTDVELDLTCADLTVSEPDVDTLQQLFKQYEFKRWLADVEAGVWLENK
KGAGAKAAGVAKPAAAVEAPKALAEAKLSQDGYVTILDEATFTDWLARLKKADVFAFDTE
TDGLDTLTANLIGLSFAVAPGEAAYLPVAHDYLDAPAQLDRAYVLEALKPLLEDEKALKV
GQNLKFDMSLLARYGIEMRGIAYDTMLESYVLDSVGGRHDMDSLADRYLGHKTITFEEIA
GKGKNQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPQLKQSAELLTVFNEIEMPLLPVL
SHIERTGVLIDPAILSAHSQELAKRLAELEAQAHELAEEPFNLASTKQLQAILYEKQKLP
VLKKTPGGAPSTNEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHL
SQDEGLLKAFAEGKDIHRATASEVFGVPLDKVTGEQRRSAKAINFGLIYGMSAFGLARQL
GIPRGEAQRYMDLYFERYPGVLDYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNAMRRK
AAERAAINAPMQGTAADIIKRAMIEVDAWLQGQEKPLVRAIMQVHDELVFEVHESVIEEA
SQRIRQLMEGSMALAVPLKVDVGVGMNWDEAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattgcagaaaacccactaatcctggttgacggttcctcctacctctaccgc
gcttatcacgccttcccgccgctgaccaactcggcgggcgagccgaccggcgcgatgtac
ggcgtgctgaatatgctgcgcagcctgctgctgcagtatcaaccgagccacgttgccgtg
gtgtttgatgccaaagggaagaccttccgcgatgatctcttcgctgaatacaaatcacac
cggccgccgatgccggacgatctgcgcgcgcagatcgagccgctgcacagcatggtcaaa
gcgatgggcctgccgctgctggtgacacccggcgttgaggcggacgacgttatcggtacg
ctggcgctggaggccgaaaaggccggccatgcggtgctgatcagcaccggcgacaaagac
atggcgcagctggtgacgccgaacgtcaccctgatcaacaccatgaacaacacgatcctc
ggcccgcaggaagtgtgcgacaagtacggcattccgccggagttgatcatcgacttcctg
gcgctgatgggcgattcatcggacaacattcccggcgtgccgggcgtgggcgagaaaacc
gcccaggcgttgctgcaggggatcggcgggctggatgcgctgtacggcaatctggagaac
atcgccacgctgagcttccgcggcgccaaaaccatggcggccaagctggagcagaacaaa
gaggtcgcgtacctctcctataagctggcgacgatcaaaaccgacgtcgaactggatctg
acctgcgcggacctgacggtctccgagccggatgtcgatacgctgcaacagctgttcaaa
cagtacgagttcaaacgctggctggcggacgtggaagccggcgtctggctggaaaacaag
aaaggcgcgggcgcgaaagctgccggcgtcgccaaaccggcagccgccgtggaagcgccg
aaagccttggcggaagccaagctgtcccaggacgggtatgtcactatcctggatgaagcg
acctttaccgactggctggcgcggctgaaaaaggccgacgtgtttgccttcgataccgaa
accgacggtctggataccctgaccgccaacctgatcggcctgtccttcgcggtcgcgccg
ggcgaagcggcttatttgccggtggcgcacgattacctggatgcgccggcgcagctggat
cgcgcttacgtgctggaggcgctcaagccgctgctggaagacgagaaggcgctcaaggtc
gggcaaaacctgaagttcgacatgagcctgctggcgcgctacggcatcgagatgcgcggc
atcgcctacgacaccatgctggagtcctatgtgctggacagcgtcggcggccgtcacgat
atggacagcctggccgatcgttatctgggccacaaaaccatcaccttcgaagagatcgcc
ggcaagggcaaaaaccagctgacgttcaatcagatcgcgctggagcaggcggcgccttac
gccgccgaagacgccgatgtcacgctgcagctgcacctggcgatgtggccgcagctgaaa
cagagcgcggaactgctgacggtattcaatgagattgaaatgccgctgctgccggtgctg
tcgcatatcgaacgcaccggggtgctgatcgatccggccattttgtcggcccactcccag
gagttggccaagcgtctggcagagttggaggcgcaggcccacgagctggcggaagagccg
ttcaacctggcgtcgaccaagcagctgcaggcgatcctgtacgaaaaacaaaagctgccg
gtgctgaagaaaaccccgggcggggcgccgtccaccaacgaagaggtgctggccgagctg
gcgctggactacccgctgccgaaggtgatcctggaataccgcggcttggcgaagctgaag
accacctataccgacaagctgccgttgatgatcaatccggtcagcgggcgggtgcatacc
tcgtaccatcaggcggtgaccgccaccggccgcctctcctcgagcgatccgaacctgcag
aacatcccggtgcgcaacgaagaagggcggcgcattcgccaggcctttattgcgccggaa
ggctaccgcatcgtcgcggccgactactcgcagatcgagctgcgcatcatggcgcatcta
tcacaggatgaggggctgctgaaggcctttgccgaagggaaagacattcaccgcgccacg
gcgtcggaagttttcggcgtgccgttggataaagtgaccggcgagcagcgccgcagcgcc
aaggcgattaacttcggtttgatttacggcatgagcgccttcggcctggcgcgtcagttg
gggatcccgcgtggggaagcccagcgctatatggatctctacttcgagcgttacccgggc
gtgctggattacatggagcgcacccgtcagcaggcttccgagcagggctatgtcagcacg
ctggacggccgccgtctgtatctgccggacgtccgctccagcaacgccatgcgccgcaag
gcggccgagcgcgccgccatcaacgccccgatgcagggcacggcagccgatatcatcaag
cgtgcgatgatcgaggtcgacgcctggctgcaagggcaggagaagccgttggtgcgcgcg
atcatgcaggtgcacgatgaattggtgttcgaggtgcatgaatcggtgatcgaagaagcc
agccagcgcatccgccaactgatggaaggcagcatggccctggcggtgccgctgaaggtc
gatgtgggcgtcggcatgaactgggatgaagcgcactga
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