Stieleria neptunia: Enr13x_59100
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Entry
Enr13x_59100 CDS
T09828
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
snep
Stieleria neptunia
Brite
KEGG Orthology (KO) [BR:
snep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snep03016
]
Enr13x_59100 (rtcB)
Enzymes [BR:
snep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Enr13x_59100 (rtcB)
Transfer RNA biogenesis [BR:
snep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Enr13x_59100 (rtcB)
Prokaryotic type
tRNA splicing ligases
Enr13x_59100 (rtcB)
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Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDV46006
UniProt:
A0A518HYS5
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All DBs
Position
complement(8076270..8077742)
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AA seq
490 aa
AA seq
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MMTVTGDALATLPVGDDLSPITVIGTEPIRQSFGGETLAQAINSRRAPGVSRVVLNPDAH
VGYGAPVGCVMVSPTHVYPGPVGVDIKCSMSLLQMDLPAEAIESLPVRKKLIRAICKRVP
TGAGRGQRHAPKSRRVDGKLGFQIATEGASKQVLKKLGIPKSWADACEDAFHTAPDGSSD
TLAARLEWMGRSCDKLDRIESKYRQLGSYGGGNHFGEAEVVRVVDSQRAIAEAFGLKDGC
VAFLSHCGSRGFGHDLAVAQFRALKTVFQKQGLAFPAGDPQLVYAPVDSPEGRDYLCDMA
MGANFATVNHLLINDLVLEAFREVFPGVRGELVYFISHNIARQEPIDGQVQWVHRKGATR
ALPAGHSQLLGTRFESTGHPILLPGNPRDGSSVMVANVGAAAAAFSVNHGAGRRLSRTKA
KKQLLQHEIDRGLAEHDVVSNCSVYPRDEAPDAYKDFEEVLRSVRQAGLAEEVARLKAKF
VIKDGAAADD
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccgtcacaggcgacgccctggcgacgctgccggtcggcgatgacctgtcgccg
atcaccgtgatcgggaccgagccgatccgccagtccttcggcggcgaaacgctggctcag
gcgatcaacagtcgccgcgcaccgggcgtttcgcgcgtcgtgctgaatcccgacgcccat
gtcggctacggcgcgccggtcggctgtgtgatggtctcgccgacccatgtctatcccggc
cccgtcggcgtggacatcaagtgcagcatgagtttgttgcagatggatttgccggccgaa
gcgatcgagtcgttgccggttcggaaaaagctgattcgcgcgatttgcaaacgcgtcccc
accggcgccgggcgcggacaacgtcacgcccccaagtctcgccgcgtcgacggcaaactc
ggtttccaaatcgcgaccgaaggcgcttcgaaacaggtgctgaagaaactcgggattcca
aagtcgtgggccgacgcctgcgaagatgcctttcacacggcacccgatggcagctccgac
acgttggcggcgcggctggaatggatgggacgcagctgcgataaactggatcggatcgaa
tcaaagtatcggcaactgggcagctatggcggcggcaatcatttcggcgaagccgaagtg
gtccgtgtcgtcgactcgcaacgcgcgatcgcggaagccttcgggctcaaggatggatgc
gtcgcttttttatcgcattgtggttcgcgcggattcgggcatgacctggccgtggcgcag
ttccgggcattgaagacggtgtttcaaaagcaggggctggcgttccccgccggtgatccc
cagttggtctacgcgccggtggattcacccgaaggccgtgactatctgtgcgacatggcg
atgggagcaaattttgccaccgtcaatcatctgctgatcaacgacctggtcctggaagcg
ttccgcgaagtctttcccggcgtgcgtggtgaactcgtttatttcatttcgcacaacatc
gcccgtcaagaaccgatcgatggacaggttcaatgggtccaccgcaagggggccacgcgc
gcgctgccggccgggcactcacaattgctcggcacgcggtttgaatcgaccggtcacccg
atcttgttgccgggtaatccacgcgacgggtccagcgtgatggttgccaacgtgggagcg
gcggccgcggcgttcagcgtcaatcacggtgcgggacgtcggctcagtcgcaccaaggcc
aagaaacagttgctgcaacacgaaatcgatcggggtttggcagagcacgacgtcgtcagc
aattgcagcgtctatcctcgcgacgaagcacccgacgcgtacaaggatttcgaagaggtg
ctgcggagcgtgcgtcaggccggattggccgaagaagtcgctcggttgaaagcgaaattt
gtgatcaaagacggcgcggccgccgacgactag
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