Stieleria neptunia: Enr13x_68700
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Entry
Enr13x_68700 CDS
T09828
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
snep
Stieleria neptunia
Pathway
snep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Enr13x_68700 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snep03019
]
Enr13x_68700 (rnr)
03016 Transfer RNA biogenesis [BR:
snep03016
]
Enr13x_68700 (rnr)
Enzymes [BR:
snep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Enr13x_68700 (rnr)
Messenger RNA biogenesis [BR:
snep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Enr13x_68700 (rnr)
Transfer RNA biogenesis [BR:
snep03016
]
Prokaryotic type
tRNA degradation factors
Enr13x_68700 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_cyt-4
Motif
Other DBs
NCBI-ProteinID:
QDV46961
UniProt:
A0A518I1K1
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All DBs
Position
9343391..9345661
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AA seq
756 aa
AA seq
DB search
MEISQELADRVMRLVVSPEYRPSKPKQIAATLNLDADDYRELRRTIKQLVLEGRLIYASN
HLIISTGAIGGPLDRIRGVFRMAAGGQFGFVRPGDSGDGAVSEDLFIPPGQTGGAFEGDL
VEVKVRPSRRGGSEGSVSRIIERSRRQFTGTFNMVDGRPAVYLDGTPHDAPVFIGDIQGL
PIEKDDKVFVEVVTFPGENGKGGEAVLLERLGSSTNPGIDTLTIMRQYALPDEFPEAVIA
EARQRADEFDEDNPPADRLDLTGQLTLTIDPYDARDFDDAISLVREDEGRWRLWVHIADV
GYFIHPGGQLDQEARQRATSVYLPDRVIPMVPEIISNHLASLQPEKVRLAKSVEIEMTDD
GTVIHSEVHNTVIRSDMRLHYRLVDQFLEAPDKYREKWGDAICDMLRDMHSLAMTIRKRR
FKRGAISMDMPDVKLELDRSGKVKGAYRTENTESHQLIEEFMLAANQAVATWLDDAGLKF
LHRIHPPPERRKLRQLSHFVRDLRLGIDSVESRFEIQNVLDRVAGTPLEDAVNFAVLKSM
NKAVYGPQTDGHYALDMQHYCHFTSPIRRYPDLTVHRLIDRLHAGEKTPDDSVGALLQLG
HHCSDMERNAAQAERELTELKLLHYLKKHLGDTMTAVISRVFADGFLARCIKLPVDGYVS
VDQLPSDQYRFERRGQMLVGFKAHHRYRLGDQLTVKISRVDLIQRELFLEPVKNHSVGNS
NPNDRGVKAANSGGGKSKHKDKRKKERRQKGKRKRR
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggaaatctcacaagaactcgccgaccgcgtgatgcggttggtcgtctcgccggaatac
cggccgagcaaacccaagcagatcgccgcgacgttaaatctggacgcggacgattaccgg
gaactgcggcgcacgatcaagcaactggtcttggaagggcgtctgatctatgcgtcgaat
catttgatcatcagcaccggggcgatcggcggccccctggaccggattcgcggcgtcttt
cggatggcggccggcggccaattcggtttcgtccggccgggcgactccggcgacggagcg
gtcagcgaagacctgttcattccgccgggacagaccggcggggcgttcgaaggtgacttg
gtcgaagtcaaagtccggccgagccgtcgcggcggaagcgaaggcagcgtgagccgaatc
atcgagcgatcgcgccgccaattcaccggcacgttcaacatggtcgatggccgcccggcc
gtttatttggacggcacaccacacgacgcaccggtcttcatcggcgacatccaaggcttg
ccgatcgagaaagacgacaaggtgtttgtcgaagtggtgacgtttcccggcgaaaacggc
aagggcggcgaagcggttctgctggaacgactgggcagttccaccaaccccgggatcgac
acgttgaccatcatgcggcaatacgccttgcccgatgagttccccgaagcggtgatcgcc
gaagcacggcaacgcgccgacgaatttgacgaagacaaccctcccgccgatcggctcgat
ctgactggacagctgacgctgacgatcgatccctacgacgcgcgtgactttgacgacgcc
atttcgctggttcgcgaagacgaaggccgctggcggttgtgggtgcacatcgccgacgtc
ggctacttcatccatcccggcggccaactcgaccaggaagcgcgccagcgggcgaccagc
gtctacctgcccgaccgcgtgattcccatggtgccggaaatcatcagcaatcacttggcc
agcctgcagccagaaaaagtccggctggccaaatcggtcgagatcgaaatgaccgacgac
ggcaccgtgattcacagcgaagttcacaacactgtgatccgcagtgacatgcggttgcac
taccgcctggtcgatcaattcctggaagccccggacaagtatcgcgagaagtggggcgat
gcgatttgtgacatgctccgcgacatgcactccctggcgatgacgatccgcaagcgtcgt
ttcaaacgcggtgcgatctcgatggacatgcccgacgtcaaactggaactggaccgtagc
ggcaaagtcaaaggcgcgtaccggacggagaacaccgaaagccaccagttgatcgaagag
ttcatgttggcggccaatcaagccgtcgcgacgtggctggacgacgccgggctgaaattc
ctgcaccgcatccacccgccgccggaacgacgcaaactgcgccagctgtcccatttcgtt
cgcgacctgcgattgggaatcgactcggtcgaaagccgtttcgaaattcaaaacgtgctc
gaccgcgtcgccggcacaccgctggaagacgcggtgaatttcgcggtgctcaaaagcatg
aacaaagcggtctacggcccccagaccgacgggcattatgcgctcgacatgcagcactat
tgccacttcaccagtccgatccggcgttacccggatttaaccgtgcatcgtctgatcgac
cgacttcacgccggtgaaaagaccccggatgattcggtcggtgcgttgttgcaactgggg
caccattgcagcgacatggaacgcaacgcggcgcaagccgagcgtgaactgaccgaactg
aagctacttcattacttaaagaaacacctcggcgacacgatgaccgccgtcatcagccgg
gtcttcgccgacggctttctggcacgctgtatcaaacttcccgtcgacggctacgtcagc
gtcgaccagctgccgtcggatcaatatcgattcgaacgtcgcggtcagatgctggtcgga
ttcaaagcgcatcatcgctatcggctgggcgatcaattgacggtcaaaatcagccgcgtc
gacctgatccaacgggaactgttcctggaaccggtcaagaatcactcggtcggcaacagc
aaccccaacgaccgaggcgtgaaagccgccaattccggcggcggcaagtcgaagcacaaa
gacaaacgcaaaaaggaacgtcgccaaaagggcaaacgcaaacgacgctaa
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