Serratia nevei: OI978_04720
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Entry
OI978_04720 CDS
T09395
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
snev
Serratia nevei
Pathway
snev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI978_04720 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snev03019
]
OI978_04720 (rnr)
03016 Transfer RNA biogenesis [BR:
snev03016
]
OI978_04720 (rnr)
Enzymes [BR:
snev01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OI978_04720 (rnr)
Messenger RNA biogenesis [BR:
snev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OI978_04720 (rnr)
Transfer RNA biogenesis [BR:
snev03016
]
Prokaryotic type
tRNA degradation factors
OI978_04720 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WIJ65301
LinkDB
All DBs
Position
complement(974493..976967)
Genome browser
AA seq
824 aa
AA seq
DB search
MSQDPFLEREAEKYESPIPSREYILAHLAKRETPASREELGNELGLSGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLRVEGSKDDLYLSAEQMKMAIH
GDVVLAQALGADRKGRREARIVRVLVPKTSQIVGRFFMDAGTGFVVPDDSRLSFDILIPA
DSVSGARMGFMVVVELTQRPTRRTKAVGKIVEILGDKMGTSMAVDIALRTHEIPHTWPPQ
VEKQVADLSEQVPEAAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPRTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AQGRLSTAKFYEAVMSSHARLTYNKVWHILQGDQELREHYHPLVKHLEELHAMYKVLDKA
RAERGGIAFETEEAKFIFNAERRIERVEPTVRNDAHKLIEECMIMANVAAARFVEKRNEP
ALYRVHDRPSDDHISALRSVLSELGLTLGGGNKPQPKDYAVLMDEVSERPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALASYGHFTSPIRRYPDLALHRAIKYQLAKEHGEPKERWTPT
GGWHSEFEEMLQLGEHCSMTERRADEATRNVADWLKCDFMQDHVGEVFSGIISSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDNIGQRLIGESSGTVYRLGDTVEIRVDAVHMDERK
IDFALVSSTRKARGEGKTERDRAKKGGQRTLRDNGSAGRGKRRGGKPPANFEPDSAFRKQ
DDAKPADNVKKAKKKAKKASDKTRKIAAATKAKRAAKKKGAEQA
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatccattcctggaacgagaagcagaaaaatacgaatcccccatccccagt
cgtgaatatatcctggcccatttggcgaaacgtgaaacgccggccagccgcgaagaactg
ggcaacgaactgggcctcagcggtgaagagcagctggaagcgctgcgccgccgcctgcgc
gccatggagcgcgatggccagctggtgtttacccgccgccagtgctacgcgctgccggaa
cgtctggatctgctgcgcggcacggtgatcggccaccgcgacggctacggcttcctgcgc
gtggaaggcagcaaagacgatctgtacctgtctgccgaacagatgaaaatggcgatccac
ggtgacgtggtgctggcgcaggccttgggcgcggatcgcaaagggcgccgcgaagcgcgc
atcgtgcgcgtgctggtgccgaaaaccagccagattgtcggccgcttcttcatggatgcc
ggcaccggcttcgtggtgccggatgacagccgtctgagcttcgatattctgatcccggcg
gacagcgtcagcggcgcgcgcatgggctttatggtggtggtggagctgacgcagcgtccg
acccgtcgcaccaaggcggtcggcaagatcgtcgagatcctcggcgacaagatgggcacc
agcatggcggtggacatcgcgctgcgcacccatgagatcccccatacctggccgccgcag
gtggaaaagcaggtggccgatctcagtgagcaggtgccggaagcggccaagaagggccgc
gtcgatctgcgcaagctgccgttggtcaccatcgacggtgaagacgcacgcgacttcgat
gacgccgtgtactgcgagaaaaaacgtggcggcggctggcgcctgtgggtcgcgatcgcc
gacgtcagttactacgtgcgcccgcgcaccgcgctggacgatgaagcgcgcagccgcggc
aactcggtgtacttcccgtcgcaggtgatcccgatgctgccggaagtgctgtccaacggg
ctgtgctccctgaacccacaggtcgatcgcctgtgcatggtgtgcgagatgaccatctcc
gcccaggggcgcctgtccacggccaagttctacgaagcggtgatgagctcgcacgctcgc
ctgacctataacaaggtgtggcacattctgcagggcgatcaggagctgcgcgagcactac
catccgctggtcaagcacctggaagagctgcacgcgatgtataaagtgctggataaggcg
cgcgccgagcgcggcggcatcgcgtttgaaaccgaagaagccaaattcatcttcaacgcc
gaacgccgcattgagcgcgtggagccgacggtgcgcaacgacgcccacaagctgatcgaa
gagtgcatgattatggccaacgtggcggccgcgcgctttgtcgagaaacgcaacgagccg
gcgctgtaccgcgtgcacgatcgtccgagcgacgaccacatatccgcgctgcgcagcgtg
ctgagcgagctggggctgacgctgggcggcggcaacaagccgcagccgaaggactatgcg
gtgctgatggatgaagtgtccgagcgccctgaccacgaaatgctgcaaaccatgttgctg
cgttcgatgaagcaggcgatttacgatccggaaaaccgcggccacttcggcctggcgctg
gcgtcttacggccacttcacctcgccgatccgccgttatccggatctggcgctgcaccgc
gcgatcaaatatcagctggccaaagaacacggcgagccgaaagagcgctggacgccgacc
ggcggctggcacagcgaattcgaagagatgctgcagctgggcgaacactgctcgatgacc
gagcgccgcgcggacgaagcgacgcgcaacgtcgccgactggctgaagtgcgacttcatg
caggatcacgtcggtgaagtgttcagtggcatcatctccagcgtgaccggcttcggcttc
ttcgtgcgcctgaacgatctgttcatcgacgggctggtgcacgtatcaacgctggataat
gattactatcgctacgataatatcggccagcgcctgatcggcgagtcttccggcacggtc
tatcgcctgggagatacagtggagatccgcgtggacgcggtgcacatggacgagcgcaag
atcgacttcgcgctggtgtccagcacccgcaaagcgcgcggtgaaggcaaaaccgaacgc
gatcgcgccaagaagggcggccagcgcacgctgcgcgacaacggtagcgcggggcgcggc
aagcgccgcggcggcaaaccgccggccaacttcgagccggacagcgccttccgcaagcag
gatgacgccaaacccgcggacaacgtgaagaaggcgaagaagaaagccaagaaagcgtcc
gacaaaacgcggaaaatcgcggcggcgaccaaagccaaacgcgcagccaagaagaaaggt
gccgagcaggcttaa
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