Serratia nevei: OI978_05165
Help
Entry
OI978_05165 CDS
T09395
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
snev
Serratia nevei
Pathway
snev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OI978_05165 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snev03021
]
OI978_05165 (rpoB)
03400 DNA repair and recombination proteins [BR:
snev03400
]
OI978_05165 (rpoB)
Enzymes [BR:
snev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OI978_05165 (rpoB)
Transcription machinery [BR:
snev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OI978_05165 (rpoB)
DNA repair and recombination proteins [BR:
snev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OI978_05165 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
WIJ65377
LinkDB
All DBs
Position
complement(1080315..1084343)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKIVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDDIQSIEVPVEYIAGKVVAKD
YIDTNTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETLRVDPTNDRL
SSLVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDEEGRFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVAGGIEADKLSKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKSDFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINQMLKQQQEVAK
LREFIQKAYDLGDDVCQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKETEIKKLLE
MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gtgctggacataccatatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatccagaagggcagtacggccttgaagccgcattccgttctgttttccctatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccggtcttc
gacgtcaaagagtgccagatccgtggtgtgacgttctctgcaccgctgcgcgtaaaactg
cgcctggttatctatgagcgcgaagcgcctgaaggtacggtcaaagacatcaaggaacaa
gaagtctacatgggcgaaattccgctcatgaccgaaaacggcacctttgtgatcaacggt
actgagagggttatcgtatctcagttgcaccgtagtcctggcgtattcttcgacagcgat
aagggtaaaacccactcctcgggtaaagtgctgtacaacgcacgtatcatcccttaccgc
ggttcatggttggacttcgagttcgatccgaaagacaacctgttcgtgcgtatcgaccgt
cgccgcaaactgcctgcgaccatcattctgcgcgcgttgaactacaccactgaacagatc
ctcgacctgttctttgacaagatcgtcttcgaaatccgcgacaacaagctgcagatggag
ctggtgccagagcgcctgcgtggtgagaccgcttcgttcgacatcgaagccaacggcaag
atctacgtagagaaaggccgtcgcatcaccgctcgtcatatccgtcagctggaaaaagac
gacattcagagcattgaagtaccggtagagtacatcgcgggcaaagtggtcgcgaaagac
tatatcgataccaataccggcgaactgatctgcgcagccaacatggagctgtcgctggat
ctgctggccaagctgagccagtccggccacaagcgcatcgaaacgctgttcaccaacgat
ctggatcacggcgcgtacatctctgaaacgctgcgtgtcgatccgaccaacgatcgtctg
agctcgctggtagaaatctaccgcatgatgcgccctggtgagccgccaacgcgcgaagct
gccgaaagcctgttcgagaacctgttcttctccgaagaccgctatgatctgtccgcggtg
ggtcgcatgaagttcaaccgttctctgctgcgcgacgagatcgaaggttcgggcatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggcaagggc
gaagtggacgatatcgaccacttgggcaaccgtcgtatccgctccgtcggcgaaatggcc
gagaaccagttccgcgtaggtctggtgcgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttcggcg
gcggtgaaagagttcttcggctccagccaactgtcccagttcatggaccagaacaacccg
ctgtccgagatcacgcacaagcgtcgtatctccgcactgggcccgggcggtctgacccgt
gagcgcgccggctttgaagttcgagacgtacacccgacccactatggccgcgtgtgccca
atcgaaacgccggaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgagtatggcttcctggaaaccccgtaccgccgcgtgcgtgacggcgtggtgacc
gatgaaatcaactacctgtctgctattgaagaaggcaacttcgttatcgcccaggcgaac
tccaacctggatgaagaaggccgcttcgtagaagacctggtcacctgtcgtagcaaaggc
gaatcaagcctgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtt
gtttccgttggtgcttcactgattccattcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgtaccaaccctgcgtgctgacaagccgctggtc
ggtaccggtatggaacgcgctgtagcggttgactccggcgtaaccgccgttgccaaacgc
ggcggtgtgatccagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggcgaagcaggtatcgatatttacaacctgaccaagtacacccgttctaac
cagaacacctgcatcaaccagatgccgtgtgtgaatctgggtgagccaatcgagcgcggc
gacgtgctggcggatggcccatcgacagacctgggcgagctggcactgggccagaacatg
cgcgtagcgttcatgccttggaacggctacaacttcgaagactccatcttggtctccgag
cgcgtggtgcaggaagatcgcttcaccactatccacatccaggaactggcgtgcgtgtct
cgcgacaccaagctggggcctgaagagatcaccgccgacatccctaacgtgggtgaagct
gcgctctccaagctggatgaatccggtatcgtgtatatcggtgcggaagtgaccggcggt
gacattctggtcggtaaggtaacgcctaaaggcgaaacccagctgacgccggaagagaaa
ctgctgcgtgcgatctttggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccgaacggcgtttccggtacggttatcgacgtgcaggtcttcacccgcgatggcgtggaa
aaagacaagcgcgcgttggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
actgaagaactgcagatcctggaagccggcctgtttgcacgtatccacgcggtgctggtt
gccggtggcatcgaagccgacaagctgagcaagctgccgcgcgatcgctggctggaactg
ggtctgaccgacgaagagaagcaaaaccagctggagcagctggctgagcagtacgacgaa
ctgaaatccgacttcgagaagaagctggaagccaagcgtcgtaagatcactcagggcgac
gatctggcgccgggcgtgctgaaaatcgtcaaggtttatctggccgttaagcgtcagatc
caaccgggtgacaagatggcgggccgccacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccatcacgtatgaacatcggtcagatcctggaaacccacctgggtatggct
gcgaaaggcatcggtgagaagatcaaccagatgctgaagcagcagcaggaagtggccaag
ctgcgtgagttcatccagaaggcctacgatctgggcgacgacgtttgccagaaagttgac
ctgaacaccttcagcgacgacgaagtgctgcgtctggcagagaacctgaaaaaaggtatg
ccgatcgcaacgccggtgtttgacggtgcgaaagagactgaaatcaagaagctgctggaa
atgggcggtatcccgacctccggtcagatcacgctgttcgatggccgtaccggtgagcaa
ttcgagcgccaggttactgtcggctatatgtacatgctgaaactgaaccacttggttgac
gataaaatgcacgcccgttcaaccggttcttacagcttggttactcagcaacctctgggt
ggtaaagcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcactggaagca
tacggcgcggcttataccctgcaggaaatgctcaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaaaaacatcgtggatggcgaccaccggatggagccaggcatgccg
gaatccttcaacgtactgttgaaagaaatccgctcgctcggcatcaacatcgaactggaa
gacgagtaa
DBGET
integrated database retrieval system
