Serratia nevei: OI978_14135
Help
Entry
OI978_14135 CDS
T09395
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
snev
Serratia nevei
Pathway
snev03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OI978_14135 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snev03000
]
OI978_14135 (alkA)
03400 DNA repair and recombination proteins [BR:
snev03400
]
OI978_14135 (alkA)
Enzymes [BR:
snev01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
OI978_14135 (alkA)
Transcription factors [BR:
snev03000
]
Prokaryotic type
Helix-turn-helix
AraC family
OI978_14135 (alkA)
DNA repair and recombination proteins [BR:
snev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OI978_14135 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_23
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
WIJ62046
LinkDB
All DBs
Position
2935469..2936959
Genome browser
AA seq
496 aa
AA seq
DB search
MQKKPNPSVAMNTQQQALYDALRARDRKFDGRFFVGVSSTGIYCRPVCSARTPKLENCTF
YPSAAAAELAGFRPCLKCRPELAPGLALIDLGNRYAQVAVQLIEQGYLSEHSCEALAARL
GISDRHLRRIFAEQFGASPIDYAQSHRLLQAKRLLADTDLPLSEVAFAAGFGSLRRFNEL
FKARYRLIPSALRSGGARGERAAASGLVFHLGYRPPYDWDRMLNFLQARAVQGVERVEGR
RYLRSISVSQGGTEYCGWLSVQPEEARNRVRVEIAPALSLVTTEVLRRVRLLFDLDAAPD
RINEALGSLAADAPGLRLPGCVNSFEQAARAVLGQLVSVKMAATFAGRMAERWGEALAAP
HEGITHVFPAAERVAQLQPEALRPLGVQLKRAAALIEIARALGEGRLQLDNVLDIEQGIK
ALTALPGIGSWTASYIAMRAWSWPDVFLAGDYLIKQRFPGMTPRQIERYAERWRPWRSYA
TLHLWHNDGWAPEGEE
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaaaaccgaacccgagcgttgccatgaatacccaacagcaagcgttgtacgac
gcgctgcgcgcgcgtgaccgcaaattcgacggccgctttttcgtcggcgtctcttccacc
ggcatttattgccgcccggtgtgcagcgcccgcacgccgaagctggaaaactgcaccttc
tatccgagcgcggcggcggccgagctggcgggctttcgcccctgtctcaaatgccggccg
gaactggcgcccggtctggcgctgatcgatctgggcaaccgctatgcgcaggtggcggtg
cagctcatcgagcagggctatctgtccgaacacagctgcgaagcgctggcggcgcggctc
ggcatttccgatcgccacctgcggcgtatcttcgctgaacagtttggcgcttcgccgatc
gattacgcgcagtcgcaccggctgctgcaggccaaacgtctgttggcggataccgatctg
ccgctcagcgaagtggcattcgccgccggtttcggcagcctgcggcgtttcaacgagctg
ttcaaggcgcgctatcgcctgattccgtcggcgctgcgcagcggcggcgcgcgcggtgaa
cgggccgccgccagcggcctggtgttccacctgggctatcggccgccctatgactgggat
cgcatgctgaacttcttgcaggcgcgcgccgtgcagggcgtagagcgggtcgagggccgc
cgctatctgcgttcgatctcagtcagccagggcggtacggagtattgcggctggctcagc
gtgcagccggaagaagcgcgcaaccgggtcagggtagagatcgcgccggcgctcagtttg
gtgacgacggaggtgctgcgccgcgtacgcttgctgttcgatttggacgccgcgccggat
cgcatcaatgaggcgctgggttcgctggcggccgatgcgccggggctgcgcctgccgggc
tgcgtaaacagcttcgaacaggcggcgcgtgcggtgctggggcaattggtcagcgtgaaa
atggcggcaaccttcgccggacggatggccgaacgttggggcgaagcgctggcggcgccg
cacgagggcatcacccacgtttttcctgccgccgaacgggtggcgcagctgcagcccgaa
gccctgcgcccgctcggggtgcagctgaagcgcgcggcggcgctgatcgagatcgcccgc
gcgctgggcgaagggcggctgcagctcgataacgtgctggatattgaacagggcatcaag
gcgctgaccgcgctgccgggcatcggcagctggaccgccagctatatcgcgatgcgcgcc
tggtcgtggccggacgtgttcctggccggcgattacctgatcaaacagcgtttccctggc
atgacgccgcgccagatcgaacgctatgccgaacgttggcgcccgtggcgctcttacgcc
acgttgcacctgtggcacaacgacggttgggcgccggaaggggaggagtga
DBGET
integrated database retrieval system
