Serratia nevei: OI978_21045
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Entry
OI978_21045 CDS
T09395
Name
(GenBank) PD-(D/E)XK nuclease-like domain-containing protein
KO
K10906
exodeoxyribonuclease VIII [EC:3.1.11.-]
Organism
snev
Serratia nevei
Brite
KEGG Orthology (KO) [BR:
snev00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snev03400
]
OI978_21045
DNA repair and recombination proteins [BR:
snev03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OI978_21045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3799
Exonuc_VIII
Motif
Other DBs
NCBI-ProteinID:
WIJ63299
LinkDB
All DBs
Position
4354172..4357381
Genome browser
AA seq
1069 aa
AA seq
DB search
MQNVAAYLYRAKQKSGKNHLFTYFEAKSDDHAETKRDFLFMEAGHSKADYFAPVRIDFPV
VDELPAEGEFSETFWLTWALESDSSKTCVPRDTLDPSVAFPKLYPYMTKPAGGAGAAENS
MTTEKTQVVQEQQKTAGEYFASSLDKHTVIAAAWLYGNNCLKLNDEQLAAAKALVMDDAQ
RYPQNVILALTSLKQFAHTYPEMPITVISGMKAIWPPFGKVPELGKLCQFATEYLDATVE
QRASVISKWQTSAGGGTKPAETAPEEPLRTESGAILTNGAEPATGTPIDSLQMLETVIGC
ALYPSDFDISNPPGAIIRAVTEMKKRNDEALKAWNEQLSATPGVLQFSRQAIVALIRGAE
ENLHVTPGALRSYINANLIEVDAKPAQQNTETVQQTGAEAQQAASNAGEKDEVVAEFETE
RCAWLQAEIRAALAGTTGVMDESDVAELTTAVGEGISHSYIARLLAKEIETCDPFKQLIA
DEVHHLTCDVLENWQDKKEPRVAFIDSRVEFYLQEARRAAEQKCREMAAAIDGADSTPLP
QENPESARVDDSDDGKKTEIDQHPGELRSMGGGFFDVSTLFNESPLAKVSTAGATTGDDV
REFLDSSTETANVSGETAELSGENVDTSAVDDAPRREVPAAPAYFEPGRYLDIPNEVYHS
ANGISSTMAKDARISLMYYHGRHVIKTIQRERTDPMTFGSLVHALALEPEKLDEEFSVEP
VIPEGAFTDTASMRAFIEQHNATLPKQTDADTLRAVIEKHNATLQAPYALGGNADEIGQF
YMLLPPEFQSIPEDAKITATAMKACIKEYNATLPAPLKTTGGRDALLEQLATIDPEFVEK
ERAIPAPLPVSGSKEDMAARIKTILPTAVFADEVISAWKNNNDQRQTITQAQMKHAKAIQ
RALFTHPSAGKLLQHPQRAVEVSYFGIDEETGLELRVRPDLEIEAGGLRTGFDLKTVSMG
NVKQSALRARLHREIIERDYHLSAGMYCDVAALDQFFWIFVNKDEHYHWIAIVEASDDLL
ELGRLEYRKTLRDIKQAQDTGVWPEPITEEIVDDINDFDQRRMEALRVA
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatgttgcagcctatctttacagggcaaaacagaaatctgggaaaaaccatctt
tttacgtactttgaggcgaagtctgacgatcacgcggagacaaagcgtgattttcttttc
atggaagctggccactcaaaagccgactacttcgcgccggtgcgcatcgattttccagtc
gttgacgagctgcccgcagagggcgaattcagcgaaacattctggcttacctgggcgctg
gaaagcgactccagcaaaacctgtgtgccgcgcgacacgctcgatccatccgtggcgttc
ccgaaactgtatccctacatgacaaaacctgcaggtggtgcaggcgcagcagaaaacagc
atgaccactgaaaaaacgcaggtggtgcaggagcagcagaaaacagcaggtgaatacttc
gcatcgagcctcgacaagcacaccgtgatcgccgcggcgtggctttacggcaataactgc
ctgaagctgaacgacgagcaattggccgcggccaaagcgctcgtgatggacgatgcacag
cgctacccgcaaaacgtcattctggcgctgaccagcctcaagcagttcgcacacacctac
ccagaaatgccgatcacggtaatctcaggcatgaaagccatctggccgccgttcggcaaa
gtgccggagctgggcaaactgtgccaattcgccaccgaatacctcgacgctacggtagaa
cagcgcgcgagcgttatctcgaagtggcaaacctcagccggcggcggcaccaagcctgcc
gaaaccgcacctgaggagccattgcgcaccgaatccggcgcgatcctcacaaacggcgcc
gagccggcaaccggcacgccgatcgactctctgcagatgctggaaaccgtaatcggctgc
gcgctgtatccgtctgatttcgacatttccaacccgccgggcgccatcatccgcgcagtc
accgagatgaaaaagcgcaacgacgaggcgctcaaagcatggaatgagcagctcagcgcc
acgcctggcgttttgcagttctcccgtcaggcgattgttgcactaatccgcggggccgaa
gaaaacctgcacgttacccccggtgcgctgcgcagctatatcaacgccaatctgatcgag
gtcgacgctaaaccggcgcaacaaaacacagagaccgtgcaacaaactggcgccgaagcg
caacaagcggcctcaaatgcgggtgaaaaagatgaagtggtcgcagagttcgagacagaa
cgctgcgcatggctgcaggctgaaatacgtgcggcgctggccggaacgactggtgttatg
gatgaaagcgacgttgccgagttgaccacggccgtcggcgaaggcatatcacacagctac
atcgctcggctgctggccaaagagattgaaacgtgcgacccattcaagcagctgatcgct
gatgaggttcaccaccttacctgcgatgttttggaaaactggcaggataaaaaagagccg
cgcgtcgcgtttatcgattcccgtgttgagttttatttgcaggaagcacgccgggcagca
gagcagaaatgccgggaaatggccgcagccatcgacggagccgacagcaccccgcttccg
caagaaaacccagagtccgcgcgggttgacgactctgatgatggcaaaaaaacggagatt
gatcagcaccccggcgaactccgcagcatgggtggtggcttcttcgacgtttccacattg
tttaatgagtcaccgctggccaaggtcagcaccgcgggcgccacaaccggcgacgatgtt
cgcgaattcctggattcgtcaacggaaacggccaatgtgtcaggcgaaacggcggagttg
tcaggtgagaacgtagatacctcggcagtcgacgacgcaccgcgccgggaagtaccggcc
gccccggcatacttcgagcctgggcgctatctggatattccgaacgaggtctaccacagc
gccaacggcatcagcagcacgatggcaaaggacgcgcggatcagcctgatgtattaccac
ggccgccacgttatcaaaaccatccagcgcgagcgcaccgatccgatgacgttcggctcg
ttggttcacgcgctggcgctagaacctgaaaagctggacgaggaattcagcgttgagcct
gtgatccccgagggggcattcacagatacagcatcgatgcgcgcatttatcgaacagcac
aacgccaccctgccgaaacagaccgacgccgatactctgcgcgccgtgatcgagaagcat
aacgccaccctgcaagcgccgtatgcgctgggcggcaacgctgacgaaatcggccagttc
tatatgctgctgccgccggaatttcagagcatcccagaggacgcaaaaatcaccgccacg
gcgatgaaagcctgcatcaaagagtacaacgccaccctgccggcgccgttgaaaaccacc
ggcggccgcgacgcactgctggaacagttggcgaccatcgatccggagtttgtcgagaaa
gagcgcgcgattccggcgccgttaccggtcagcggcagcaaagaggatatggccgcgcgt
atcaaaacgattttgccaacggcggtattcgccgacgaagtgatcagcgcatggaaaaat
aacaacgaccagcgccagacgatcacgcaggcgcagatgaaacacgccaaggcaattcag
cgcgccctattcacccacccatcggccgggaagttgctgcagcacccacaacgcgcggtt
gaggtgagctatttcggcatcgacgaggaaaccggcctcgagctgcgcgtacgtcccgat
cttgagattgaggccggcggcctgcgtaccggtttcgacctgaaaaccgtcagcatgggt
aacgtcaagcaaagcgccctgcgcgcgcgcctgcaccgtgaaatcatcgagcgcgattac
cacctgagcgcaggcatgtattgcgatgttgcggcgctggatcagttcttctggatcttc
gtcaacaaggatgagcactaccactggatcgccatcgttgaggcctccgatgacctgctc
gagctcggccgccttgagtaccgcaaaaccctgcgggatatcaaacaggcacaggatacc
ggcgtgtggccagaaccaatcaccgaagaaatcgtggacgacattaatgactttgaccag
cgccgcatggaagcgctgcgcgtagcctaa
DBGET
integrated database retrieval system
