Serratia nevei: OI978_21325
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Entry
OI978_21325 CDS
T09395
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
snev
Serratia nevei
Brite
KEGG Orthology (KO) [BR:
snev00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snev03019
]
OI978_21325 (hrpA)
Enzymes [BR:
snev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OI978_21325 (hrpA)
Messenger RNA biogenesis [BR:
snev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OI978_21325 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
NACHT
nSTAND3
T2SSE
nSTAND_NTPase5
PhoH
DUF6145
SLFN-g3_helicase
AAA_16
AAA_25
HALZ
Motif
Other DBs
NCBI-ProteinID:
WIJ63353
LinkDB
All DBs
Position
complement(4415911..4419798)
Genome browser
AA seq
1295 aa
AA seq
DB search
MKSPLEALPAQLGELMLRDQQRLRRRLQGARKIKNPDAQLAVAAEVESDIAAARQKVQAR
AASCPRITYPESLPVSQKKQDILNAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGL
IGHTQPRRLAARTVANRIADELETPLGGSVGYKVRFNDQVGDNTLVKLMTDGILLAEIQQ
DRLLMQYDTLIIDEAHERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNNA
PIIEVSGRTYPVEVRYRPVVDDGDDTDRDQLQAIFDAVDELGREGPGDILIFMSGEREIR
DTADALNRLNLPHTEVLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGVCIRLYSEQDFLSRPAFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIATAENGHYQ
LTPQGRQLAQLPIDPRLARMVLEAQKSGSVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDYLQEQQKANSSSQFRRLCRNDFLNYLRVREWQDIYTQLRQVV
KELGLPINSTPSDYRSVHTALLTGLLSHIGQKDADKQEFTGARNARFSLFPGSGLFKKPP
KWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLVKHSYSEPHWSKSQGAVMASEKVTLF
GLPIVAARQVNYGSIDPLLCRELFIRHALVEGDWQTRHACFRENQKLRAEVEELEHKSRR
RDILVDDETLFGFYDRRIPNDVVSGRHFDSWWKSAAKQQPDLLNFEKEMLIKDGANKISA
LDYPNFWHQGNLKLRLSYQFEPGTDADGVTVHIPLPILNQVEDQGFEWQIPGIRRELVIA
LIKSLPKPVRRNFVPAPNYAEAFLGRVTALELPLLDALERELRRMTGVTVSRDDWQWDQV
PDHLKMTFRVVGEKNQTLREGKDLAALRLQLKEKVQETLSAVADDGLEQSNLHVWSFGQL
PAFYEQKRGGYSMKAYPALVDEKDSVAIRLFDSESEQQQAMWQGTRRLLLLNIPSPIKYL
HEKLPNKAKLGLYFNPYGKVLELIDDCISCGIDKLIAEHGGPVWHEEGFARLQEQIRAEL
NDTVVEVAKQVEQILTAVFNINKRLKGRVDMSLALALSDIKTQLGGLVYRGFVTGNGWKR
LPDTLRYLQAIERRLEKLAIDPHRDRAQMLRVEQVQQAWQQWLNKLPPKRQQEEEVKAVR
WMIEELRVSLFAQQLGTPYPISDKRILQTIEQLSG
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatctccgctcgaggcactgccggcccaactgggtgagctgatgctccgcgatcaa
caacgcctgcgtcgtcgcctgcagggcgcacgaaaaatcaaaaatcccgatgcccagctg
gcggttgccgccgaagtagaaagcgacatcgcggcggcgcggcaaaaagtgcaggcgcgc
gccgcgtcttgcccgcgcattacctatccggaaagcctgccggtcagccaaaaaaagcag
gacattttaaacgccattcgcgatcaccaggtggtgatcgtcgccggggaaaccggctcg
gggaaaaccacccagctgccgaagatctgtctggaactggggcgcggggtgaaaggcctg
atcggccatacccagccgcgccgcctggcggcgcgcaccgttgccaaccgcatcgccgac
gagctggaaaccccgctcggcggcagcgtcggctataaggtgcgcttcaacgatcaggtg
ggggacaataccctggtcaagctgatgaccgacggtatcttgctggcggaaattcagcag
gaccgcctgctgatgcagtacgacacgctgatcatcgatgaagcgcacgagcgcagcctc
aatatcgactttattctcggctacctgcgcgaactgttgccgaagcgcccggatctcaag
gtgatcatcacctcggcgaccatcgatccgcagcgcttctcgcgccatttcaacaatgcg
ccaatcatcgaggtttccggccgcacctacccggtggaggtgcgctaccgcccggtggtc
gacgacggcgacgataccgatcgcgaccagctgcaggcgattttcgatgcggtggacgag
cttgggcgcgaaggaccgggcgacattctgatcttcatgagcggcgagcgcgagatccgc
gataccgccgacgccctgaaccgcctcaatctgccgcataccgaggtgctgccgctgtat
gcgcgcctgtcgaacagcgagcagaaccgggtgttccagtcgcaccacggccgccgcatc
gtgctggccaccaacgtggcggaaacctcgctgacggtgccgggcatcaagtacgtcatc
gatccgggcaccgcgcgcatcagccgctacagtttccgcaccaaggtgcagcgcctgccg
attgaaccggtgtcgcaggcctccgccaaccagcgtaaagggcgctgcggccgcgtgtcg
gaaggggtgtgcatccgtctgtactccgagcaggatttcctgtctcggccggcgtttacc
gatccggaaattctgcgcaccaacctggcgtcggtcattctgcagatgacctcgctgggg
ctgggcgacatcgcagcgtttccgttcgtcgaggcgccggacaagcgcaacattcaggat
ggcgtgcgcctgctggaagagctgggggcgatcgccaccgccgaaaacggccactatcag
ctgacgccgcagggccggcagctggcgcagttgccgattgacccgcgtctggcgcgcatg
gtgctggaggcgcagaagagcggcagcgtgcgcgaggtgatgatcatcaccgccgcgctg
tcgattcaggatccgcgtgagcgcccgatggacaagcagcaggcctcggatgaaaaacac
cgccgctttgccgacaaggactcggacttcctggcgttcgtcaacctgtgggattatctg
caggagcagcaaaaagcgaactcttccagccagttccgccgcctgtgccgcaacgatttc
ctcaactacctgcgggtgcgcgagtggcaggatatctatacccagctgcgccaggtggtg
aaagagctggggctgccgatcaacagcacgccttccgactaccgcagcgtgcacaccgcg
ctgctgaccggcttgctgtcgcacattggccagaaggatgcggacaagcaggaatttacc
ggcgcgcgcaacgcccgtttctcgctcttccccggctccggcctgttcaagaagccgccg
aagtggaccatggtggccgaactggtggaaaccagccgcctgtgggggcgcatcgccgcg
cgcattgaaccggaatggattgagccgctggctcagcacctggtgaaacacagctacagc
gagccgcactggtcgaaatcgcagggggcggtgatggccagcgaaaaagtcacgctgttc
ggtctgccgatcgtcgcggcgcgccaggtcaattacggctccatcgatccgctgctgtgc
cgcgagctgtttatccgccatgcgctggtggagggcgactggcagacgcgccacgcctgc
ttccgcgaaaaccaaaagctgcgcgccgaggtagaggagctggagcataaatcacgccgc
cgcgacattttggtggacgacgaaacgctgttcggcttctacgatcgccgtattcccaac
gacgtggtttccggccgtcatttcgacagctggtggaagagcgcggccaaacagcagccg
gacctgctgaacttcgaaaaagagatgctgatcaaagacggcgccaacaagatcagcgcg
ctcgactacccgaacttctggcatcagggcaaccttaagctgcggctgagctaccagttc
gaaccgggcaccgacgccgacggcgtgacggtgcacattccgctgccgatcctcaaccag
gtggaggatcagggcttcgaatggcagatccccggcatccgccgcgagctggtgattgcg
ctgatcaagtcgctgccgaagccggtgcgccgcaacttcgtgccggcaccgaactacgcc
gaggcgttccttggccgcgtcaccgcgctggaattgccgctgctggacgcgctggagcgc
gagctgcggcgcatgaccggcgtgaccgtgtcacgtgatgattggcagtgggatcaggtg
cccgatcacctgaagatgaccttccgcgtggtgggcgagaaaaaccagacgctgcgcgaa
ggcaaagacctggccgcgttgcgcctgcagctgaaagagaaggtgcaggagacgctgtcg
gcggtggccgacgacgggctggagcagagcaatctgcatgtctggagctttggccaactg
ccggcgttttacgagcagaagcgcggcggctattccatgaaggcttacccggcgctggtg
gatgaaaaggacagcgtggcgatccgcctgttcgacagcgaaagcgagcagcaacaggcg
atgtggcagggcacgcgccgcctgctgttgctgaatattccttcgccgatcaaatacctg
catgaaaagctgccgaacaaggccaagctggggctctatttcaacccgtacggcaaggtg
ctggagctgatcgacgactgtatttcgtgtggcatcgacaaactgatcgccgaacacggc
ggcccggtctggcatgaggaaggctttgcccgcctgcaggagcagatccgcgccgagctg
aacgacacggtcgtcgaggtggccaagcaggttgagcagatcctgacggcggttttcaac
atcaacaaacggctgaaaggccgggtggacatgtcgttagcgctggcgctgtcggacatc
aagacccagctcggcgggctggtttaccgcggcttcgtgaccggcaacggctggaaacgc
ctgccggacacgctgcgttacctgcaggcgatcgaacgccggttggaaaaactggctatc
gatccgcatcgcgatcgcgcgcagatgttgcgggttgagcaggtgcagcaggcgtggcag
cagtggctgaacaagctaccgccgaagcgccagcaggaggaagaggtgaaagcggtgcgc
tggatgatcgaagagctgcgcgtcagcctgttcgcgcagcagttgggcacgccttacccg
atctccgacaagcgcattttgcaaactatcgagcagctttcgggctaa
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