Serratia nevei: OI978_23170
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Entry
OI978_23170 CDS
T09395
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snev
Serratia nevei
Pathway
snev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OI978_23170 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snev03400
]
OI978_23170 (mfd)
Enzymes [BR:
snev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OI978_23170 (mfd)
DNA repair and recombination proteins [BR:
snev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OI978_23170 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
WIJ63683
LinkDB
All DBs
Position
4784334..4787807
Genome browser
AA seq
1157 aa
AA seq
DB search
MSTSDSRNRSSSPRYSLPDRAGDLRQLGQLTGAACAVECAEIVERHPGPVMLIAPDMQNA
LRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISDRLSSLYHLPTMARGVIILPVNT
LMQRVCPHEFLHGHALVMKKGQRLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLY
PMGSDEPYRIDFFDDEIDSLRIFDVDTQRTLSEVEAINLLPAHEFPTDKNAIELFRSQWR
EQFEVRRDAEHIYQQVSKSAWPAGIEYWQPLFFSQPLPSLFSYLPANTLIVNTGDLEGAA
ERFWQDVNQRYESRRVDPMRPLLAPDTLWLRVDALFGELKAWPRIALKTDKLPPKAGNTN
LDYHALPDLAVQAQHKSPLDNLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLAPALI
QRLDQAETAGRYMMVGAAEHGFLDGLRQRALICESDLLGERVSRRRQDNRRTINTDTLIR
NLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLISRY
AGGADENAPLHKLGGDAWTRARQKAAERVRDVAAELLDIYAQRAAKAGFAFKHNREQYQL
FCQSFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGKQV
AVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDDAAEGKVDIIIGTHK
LLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPARRLAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLAEL
VPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADRFG
LAQLHQLRGRVGRSHHQAYAYLLTPNPKAMGTDAHKRLEAIASLEDLGAGFALATHDLEI
RGAGELLGEDQSGQMTTVGFSLYMELLESAVDALKNGREPSLEDLTSSQTEVELRMPALL
PEDFIPDVNTRLSLYKRIASAKRDGELDELKVELIDRFGQLPDAARNLLQCAALRLHAQK
LGIKRIESNERGGFIEFGDNNRVDPGYLIGLLLGNPQVYRLDGPSKLKFTLDLADRQKRL
TFTEELLDAFREHTLAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttccgatagccgtaaccgttcctcatccccccgttattctctgcccgatcgc
gcgggcgatctgcgccagctggggcaactgaccggcgcggcctgcgccgtggagtgcgcc
gagatcgtcgaacgccacccaggcccggtgatgctgatcgcgccggacatgcaaaacgcc
ctgcggctgcgcgacgagatccagcagttcaccgaccagatggtgaccacgctgtccgac
tgggaaaccttgccgtacgacagcttctcgccgcatcaggaaatcatctcggatcgtttg
tcgagcctgtatcacctgccgaccatggcgcgcggcgtgatcattctgccggtcaacacc
ctgatgcagcgcgtctgcccgcacgagttcctgcacggccacgcgctggtgatgaagaaa
ggccagcgcctgtcgcgcgacaagctgcgcgcgcagctggaacaggccggttaccgcagc
gtcgatcaggtgatggagcacggcgaattcgccacccgcggcgcgttgctcgatctttac
ccgatgggcagcgatgagccttaccgcatcgactttttcgatgacgaaatcgacagcctg
cgcatcttcgacgtcgatacccagcgcacgctgagcgaagtcgaggccatcaatctgttg
ccggcccacgagttccccaccgacaaaaacgccatcgagctgttccgcagccagtggcgc
gagcagtttgaggtgcgccgcgacgccgagcacatctatcagcaggtcagcaaaagcgcc
tggccggccggcatcgaatactggcagccgctgttcttcagccagccgctgccgtcgctg
ttcagctatctgccggccaatacgctgatcgtcaacaccggcgatctggagggcgccgcc
gagcgcttctggcaggacgtcaaccagcgttatgaaagccgccgcgtcgatccgatgcgc
ccgctgctggcacccgatacgctgtggctgcgcgtcgacgcgctgttcggcgagctgaag
gcctggccgcgcatcgcgctgaaaaccgataagctgccgcccaaggccggcaataccaat
ctggactaccatgccctgcccgatctggcggtgcaagcgcagcataaatccccgctggat
aacctgcggcgctttatcgaaggcttcgacggcagcgtgattttctccgtcgagagcgag
gggcggcgtgaaacgctgcaggatctgctcggccgcatcaagctggcgccggcgctgatt
cagcgcctcgatcaggcggaaacggcgggccgttacatgatggtcggcgccgccgaacac
ggcttcctcgacggcctgcgccagcgggcgctgatctgcgaaagcgatctgctcggcgag
cgcgtcagccgccgccggcaggataaccggcgcaccatcaataccgatactctgatccgc
aacctggcggagctccatcccggccagccggtggtgcatctggagcacggcgtcggccgc
tacgtcggcctgaccacgctggaggccggcggcatcaaggccgagtacctgatcctctcc
tacgccggtgaggacaagctgtacgtgccggtttcttcgctgcatctgatcagccgttat
gccggcggcgcggacgaaaacgccccgctgcacaaactgggcggcgacgcctggacgcgc
gcgcggcagaaagcggccgagcgcgtgcgcgacgtagcggcggagctgctggatatctac
gcccagcgcgccgccaaggccggtttcgccttcaaacacaaccgcgaacagtaccagctg
ttctgccagagcttcccgttcgaaaccacgccggatcaggaacaggcgatcaacgcggtg
ctgagcgacatgtgccagccgttggcgatggaccgcctggtgtgcggcgacgtcggcttc
ggcaaaaccgaagtggcgatgcgcgccgccttcctggcggtggaaaacggcaagcaggtg
gcggtgctggtgccgaccaccctgctggcacagcagcacttcgacaacttccgcgatcgc
ttcgccacctggccgatccgcatcgaaatgatgtcgcgcttccgcagcgccaaagagcag
cagcaggtgctggatgacgcggccgaaggcaaggtagacatcatcatcggcacccacaag
ctgctgcagagcgatctgcgctggaaagacctggggctgctgatcgtcgatgaagaacac
cgctttggcgtgcgccataaagaacgcatcaaggcgatgcgcgccgacgtcgatatcctg
acgctgaccgccacgccgatcccgcgtaccctgaacatggcgatgagcggcatgcgcgat
ctgtcgatcatcgccaccccgccggcgcgccggctggcggtgaagaccttcgtgcgcgaa
tacgacagcctggtggtgcgcgaggcgatcctgcgcgaagtgctgcgcggcggccaggtt
tactacctctacaacgacgtggaaaacatcgagaaagcggcgcagcgcctggcggaactg
gtgccggaagcacgcatcgccatcggccacggccagatgcgcgaacgcgatctggaacgg
gtgatgaacgatttccaccaccagcgcttcaacgtgctggtgtgtaccaccatcatcgag
accggcatcgatatccccagcgccaacaccatcatcatcgagcgggccgatcgcttcggc
ctggcgcagctgcaccagctgcgcggccgcgtcgggcgttcgcaccaccaggcttacgcc
tatctgctgacgccgaacccgaaagccatgggcaccgacgcccataaacggctcgaagcc
atcgcatcgctggaagatctcggcgccggtttcgcgctggcgacccacgatctcgagatc
cgcggcgccggtgaactgctgggcgaagaccagagcggccagatgaccaccgtcggtttc
tcgctctacatggagctgttggaaagcgccgtcgatgcgttgaaaaacggccgcgaaccg
tcgctggaagatctcaccagcagccagaccgaggtggaactgcgcatgccggcgctgctg
ccggaagatttcattcccgacgtcaatacccgtctttcgctgtacaagcgtatcgccagc
gcgaagcgcgacggcgagctggatgagctgaaagtcgagctgatcgaccgcttcggccag
ttgccggacgcggcgcgcaacctgttgcagtgcgcggcgctgcgcctgcatgcgcagaag
ctgggcatcaaacgcatcgagagcaacgagcgcggcggctttatcgagttcggcgacaac
aaccgcgtcgatcccggttatctgatcggcctgctactgggcaatccgcaggtttaccgc
ctggacggcccgagcaagctgaagttcacgctcgatttggccgatcgccagaaacgcctg
acgttcaccgaagagttgctggacgccttccgcgaacacacgctggcggcctga
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integrated database retrieval system
