Streptomyces nojiriensis: JYK04_01404
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Entry
JYK04_01404 CDS
T07326
Symbol
thpR_3
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
snf
Streptomyces nojiriensis
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snf03016
]
JYK04_01404 (thpR_3)
Enzymes [BR:
snf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
JYK04_01404 (thpR_3)
Transfer RNA biogenesis [BR:
snf03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
JYK04_01404 (thpR_3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
QTI43642
LinkDB
All DBs
Position
1439265..1439849
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AA seq
194 aa
AA seq
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MNEKTQAATVRVFIALAPPDDAKEELEQRLQPAYAAYPRMRWNRIEDWHITLAFLGELPV
TALELLRPPLAELARARRPLRLALRGGGHFDERVLWTGIGGDLEGLHLLAAEVRAAVTDC
GVPFHGRPLRPHLTLARSRRHDTTSAVEAATGLDAFTGRPWDARRLHLVGSNTGRGPGPI
HYRDIQAWPFEGGG
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaaaagacccaggcagcgaccgtccgcgtgttcatagcgctggccccgcccgac
gacgcgaaggaagagctggagcagcggctgcagccggcctacgccgcgtacccgcgcatg
cgctggaaccgcatcgaggactggcacatcaccctggccttcctcggcgagctcccggtc
accgccctcgaactcctgcggccgccgctcgcggagctcgcccgggcccggcggcccctg
cggctcgcgctgcgtggcggcgggcacttcgacgagcgggtcctgtggaccgggatcggc
ggagacctcgaagggctgcacctcctcgccgccgaggtgcgcgccgcggtcaccgactgc
ggcgtccccttccacgggcggcccctgcgcccccatctgacgctggctcgctcccgccgg
cacgacaccaccagcgcggtggaggccgccaccggactcgacgcgttcaccggccgcccg
tgggacgcccggcgcctccacctcgtcgggagcaacaccggccgcggccccggccccatc
cactaccgcgacatccaggcctggcccttcgagggcggcggctga
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