Streptomyces nojiriensis: JYK04_02742
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Entry
JYK04_02742 CDS
T07326
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf03030
DNA replication
snf03430
Mismatch repair
snf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYK04_02742 (dnaE1)
03430 Mismatch repair
JYK04_02742 (dnaE1)
03440 Homologous recombination
JYK04_02742 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snf03032
]
JYK04_02742 (dnaE1)
03400 DNA repair and recombination proteins [BR:
snf03400
]
JYK04_02742 (dnaE1)
Enzymes [BR:
snf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYK04_02742 (dnaE1)
DNA replication proteins [BR:
snf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JYK04_02742 (dnaE1)
DNA repair and recombination proteins [BR:
snf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JYK04_02742 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QTI44959
LinkDB
All DBs
Position
complement(2911124..2914666)
Genome browser
AA seq
1180 aa
AA seq
DB search
MTKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQKA
GITPIIGIEAYVAPESRRNKRRIQWGQPHQKRDDVSGSGGYTHKTIWASNATGLHNIFRL
SSDAYAEGWLTKWPRMDKETISKWSEGLIASTGCPSGEVQTRLRLGQFDEAVQAASDYKD
IFGEGRYFLELMDHGIEIERRVRDGLLEIGKKLGIPPLVTNDSHYTYASEAGAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLVADQIDTEGMFKFRN
LMPKFDIPDGHTEVSWFREETMRGMHRRYPGGIPEDRMQQAEYEMDTIISMGFPGYFLVV
ADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPLTHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIPLSGILDPQHPRYGEAGEIRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAG
VIMSSETITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKA
NKGIDIDLLALPLDDPKTFELLGRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNKQQEITPIHPELEGPLEEVLAVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPEELAKNFVIFEEGARGKGFSDAAIKALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANFPAEYMAGLLTSVKDDKDKSAIYLNECRRMGIKVLPPNVNES
EPNFAAQGDDVILFGLTAVRNVGTNVVESIIRTRKAKGKFSSFPDFLDKVEAVVCNKRTV
ESLIKAGAYDEMGHTRKGLVAHHESMIDNVVAVKRKEAEGQFDLFGGMGDENASDEPGFG
LDVEFSDVEWEKSYLLAQEREMLGLYVSDHPLFGLEHVLSDKTDAGISQLTGGEHSDGAV
VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDTVVFVKGR
LDKREDVPRLVAMEMMVPDLSSAGTNAPVVLTIPTVKVTPPMVTRLGEILRHHKGNTEVR
IKLQGPRTTTVLRLDKHRVQPDPALFGDLKVLLGPSCLAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaacgcgtgcaacgagatgggcatgacgcacatcgcc
atgtccgaccacggcaatctgcacggggcgtacgacttcttccacaccgcgcagaaggcc
ggcatcacgccgatcatcggcatcgaggcgtacgtcgcccccgagtcccggcgcaacaag
cggcgcatccagtggggccagccgcaccagaagcgcgacgacgtctccggttccggcggt
tacacccacaagacgatctgggcgtcgaacgccaccggtctgcacaacatcttccggctg
tcctccgacgcgtacgccgagggctggctcacgaagtggccgcggatggacaaggagacc
atctccaagtggtccgagggcctgatcgcctccaccggctgcccgtccggcgaggtgcag
accaggctgcggctcggccagttcgacgaggccgtgcaggccgcctccgactacaaggac
atcttcggcgaggggcgctacttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgacgggctgctggagatcggcaagaagctcggcatcccgccgctggtgacg
aacgactcccactacacgtacgcgagcgaggccggcgcccacgacgccctgctctgcatc
cagaccggcaagaacctctcggacccggaccgcttccgcttcgacggcaccggctactac
ctgaagtcgaccgacgagatgtacgcgatcgactcctcggacgcctggcaggagggctgc
gccaacacgcggctcgtcgccgaccagatcgacaccgagggcatgttcaagttccggaac
ctgatgccgaagttcgacatcccggacggccacaccgaggtcagctggttccgcgaggag
accatgcgcggcatgcaccgccgctaccccggaggcattccggaggaccggatgcagcag
gccgagtacgagatggacacgatcatctcgatgggcttcccgggctacttcctcgtggtc
gccgacttcatcatgtgggccaagaaccagggcatcgcggtgggcccgggccgaggctcc
gcggccggttcgatcgtcgcctacgccatgggcatcaccgacctcgacccgctcacgcac
ggcctgatcttcgagcgcttcctgaaccccgagcgcgtctccatgcccgatgtcgacatc
gacttcgacgagcgccggcgcgtcgaggtgatccggtacgtgaccgagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaccatcaaggccaagaacgcgatcaaggac
tcggcgcgcgtcctgggctacccgtacgccatgggcgaccggctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcccgctctccggcatcctcgacccgcagcacccccgc
tacggcgaggccggcgagatccgcgggatgtacgagaacgagcccgacgtgaagaaggtc
atcgacaccgcccgcggtgtggagggcctggtccgccagatgggcgtgcacgccgccggc
gtgatcatgtccagcgagaccatcaccgaccacgtacccgtctgggtgcggcacaccgac
ggcgtcaccatcacccagtgggactacccgagctgcgagtcgctcggcctgctgaagatg
gacttcctcggcctgcgcaacctcacgatcatggacgacgccgtcaagatggtgaaggcc
aacaaggggatcgacatcgatctcctggccctcccgctcgacgaccccaagaccttcgaa
ctgctcggccgcggtgacaccctcggcgtcttccagttcgacggcgggcccatgcgctcc
ctgctgcgcctgatgaagcccgacaacttcgaggacatctccgccgtctcggccctgtac
cggccgggcccgatgggcatgaactcgcacacgaactacgccctgcgcaagaacaagcag
caggagatcaccccgatccacccggagctggaggggcccctcgaagaggtgctcgcggtc
acctacggcctgatcgtgtaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactcgctcggcgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgaggag
ctggcgaagaacttcgtcatcttcgaggagggcgccaggggcaagggcttcagcgacgcg
gcgatcaaggccctgtgggacgtcctggtccccttcgccggctacgccttcaacaaggcc
cactcggccgcgtacggcctggtctcgtactggaccgcgtacctcaaggcgaacttcccg
gccgagtacatggccggcctgctcacctcggtcaaggacgacaaggacaagtccgcgatc
tacctgaacgagtgccgccggatgggcatcaaggtcctgccgccgaacgtgaacgagtcc
gagccgaacttcgcggcccagggcgacgacgtgatcctcttcggcctcaccgcggtgcgc
aacgtcggcaccaacgtggtcgagtcgatcatcaggacgaggaaggccaaggggaagttc
tcctccttccccgacttcctggacaaggtcgaggccgtcgtctgcaacaagcgcaccgtc
gagtcgctgatcaaggccggcgcctacgacgagatgggccacacccgcaagggcctggtc
gcgcaccacgagtcgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgaggga
cagttcgacctgttcggcggcatgggtgacgagaacgcgagcgacgagcccggcttcggc
ctcgacgtggagttctccgacgtcgagtgggagaagtcctacctgctcgcccaggagcgc
gagatgctcggcctctacgtctccgaccacccgctcttcggcctggagcacgtgctctcc
gacaagacggacgccggtatctcccagctgaccggcggcgagcactccgacggcgccgtc
gtcaccatcggcggcatcatctcgggcctccagcgcaagatgaccaagcagggcaacgcc
tgggccatcgccaccgtcgaggacctggccggctccatcgaatgcatgttcttcccggcg
acctaccagctcgtctccacccagctggtcgaggacaccgtggtcttcgtcaagggccgc
ctcgacaagcgcgaggacgtcccccgcctggtcgccatggagatgatggtccccgacctc
tcctcggccggcaccaacgccccggtggtcctcaccatccccaccgtcaaggtcacgccg
cccatggtgacccgtctgggcgagatcctgcgccaccacaagggcaacaccgaggtgcgg
atcaagctccaggggccccgcaccaccaccgtgctccgcctcgacaagcaccgcgtccag
cccgacccggcgctcttcggcgacctcaaggtgctgctcggcccgtcctgcctggccgga
tag
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integrated database retrieval system
