Streptomyces nojiriensis: JYK04_03367
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Entry
JYK04_03367 CDS
T07326
Symbol
recD2_2
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYK04_03367 (recD2_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snf03400
]
JYK04_03367 (recD2_2)
Enzymes [BR:
snf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JYK04_03367 (recD2_2)
DNA repair and recombination proteins [BR:
snf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYK04_03367 (recD2_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
HHH_5
AAA_11
AAA_22
TraI_hel_assoc_N
PIF1
Helicase_RecD
AAA_16
NPHP3_N
PhoH
nSTAND3
DEAD
HHH
HTH_IclR
DUF87
UvrD_C
SLFN-g3_helicase
TrwB_AAD_bind
AAA
NACHT
ATPase_2
ABC_tran
P-loop_TraG
Motif
Other DBs
NCBI-ProteinID:
QTI45573
LinkDB
All DBs
Position
complement(3599657..3601915)
Genome browser
AA seq
752 aa
AA seq
DB search
MAAADGAPRAVQLAVVDGVLERITYANEESGYTVARVDTGRGSGDLLTVVGSLLGAQPGE
SLRMEGRWGSHPQYGKQFTVENYRTVLPATIQGIRRYLGSGLIKGIGPKIAERIVEHFGT
DTLDVIEGEPKRLIEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGVSTSIAVRIYKK
YADASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQG
HCFLPEDRLIADGVKLLQVDTGLVIDCLAELAADPEGVVREPVPDPQGGPDPLTAVYLVP
FHRAELSLVGQVRRLLHAEDDRMPGFQDVDWEKALGWLAGRTGATLAPEQRDAVKLALTR
RVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLAAPTGRAAKRLAELTGAEASTVHRLLE
LKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGA
GEVLRDLLAEGGPVPAVRLTRIFRQAQQSGVVTNAHRINTGLPPITDGLPDFFLFPEEDT
EAAGVLAVDVAARRIPARFGLDPRRDVQVLAPMHRGPAGAGNLNGLLQQAMTPARPNLPE
KRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTGLDVDEQRLTVRTEEDEEIVYEF
GELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVLVGSRK
ALGQAVRTVSAGRRYTAVAARLSGRIPVGNIT
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcagacggggcgccgcgggcggtgcaactggcggtggtcgacggcgtgctc
gaacgcatcacctacgccaacgaggagagcgggtacacggtcgcccgtgtggacaccggc
cgtggcagcggcgatctgctgacggtggtcggctcgctgctgggcgcccagcccggcgag
tccctgcggatggagggccgctggggctcccacccgcagtacggcaagcagttcaccgtg
gagaactaccggacggtgctccccgcgaccatccagggcatccgccgctacctcggctcg
ggcctgatcaagggcatcggtccgaagatcgccgagcggatcgtggagcacttcggcacc
gacaccctcgacgtcatcgagggcgagccgaagcggctgatcgaggtacccgggctcggc
cccaagcggacgaagctgatcggcgcggcctgggaggagcagaaggccatcaaggaggtc
atggtcttcctccagggcgtcggcgtctccacctccatcgccgtgcgcatctacaagaag
tacgccgacgcctccatctccgtggtgaagaaccagccctaccggctcgccgccgacgtg
tggggcatcggcttcctcaccgccgaccgcatcgcccaggccgtcggcatcccgcacgac
agccccgaaagggtgaaggccggcctccagtacgccctgtcccagtccaccgaccagggg
cactgcttcctgcccgaggaccggctgatcgccgacggggtcaagctgctccaggtggac
acggggctggtgatcgactgcctggccgagctcgccgccgacccggaaggggtcgtacgg
gagcccgtaccggatccgcagggcgggccggacccgctgaccgcggtgtacctggtgccc
ttccaccgggccgagctgtccctggtggggcaggtacgccggctgctgcacgccgaggac
gaccggatgccgggcttccaggacgtggactgggagaaggccctgggctggctcgccggg
cggacgggggccacgctcgcccccgagcagcgggacgccgtgaagctggcgctgacccgc
cgggtcgccgtcctcacgggcgggcccggctgcgggaagtccttcaccgtgcgctcgatc
gtcgagctggcccgggcgaagaaggcgaaggtggtgctggccgcgcccaccggccgggcg
gcgaagcggctggccgagctcaccggggccgaggcctccacggtgcaccggctgctggag
ctcaaaccgggcggggacgcggcgtacgaccgggagcgcccgctggacgcggacctggtc
gtcgtcgacgaggcctcgatgctggacctgctgctggccaacaagctggtcaaggcggtg
gcaccgggggcgcacctgctgctggtcggcgatgtggaccagctgccgtcggtcggcgcc
ggggaggtgctgcgggacctgctggccgagggcggcccggtgcccgcggtgcggctgacc
cggatcttccggcaggcccagcagtccggcgtggtcaccaacgcccaccggatcaacacc
gggttgccgccgatcacggacgggctgccggacttcttcctgttcccggaggaggacacc
gaggcggccggggtgctggccgtggacgtggccgcccgaaggatcccggccagattcggg
ctcgacccgcggcgggacgtccaggtgctcgcgccgatgcaccgcggcccggccggcgcc
gggaacctcaacggactgctccagcaggcgatgacaccggcccggccgaacctgccggag
aagaggttcggcggccgggtcttccgggtgggcgacaaggtgacccagatccggaacaac
tacgagaagggcgccaacggcgtcttcaacggcaccgtgggcgtggtcaccggactggac
gtggacgaacagcgcctgacggtacggacggaggaggacgaggagatcgtgtacgagttc
ggggagctcgacgagctggcccacgcgtacgccgtcaccattcaccgttcacaggggagt
gaatatccggcggtggtgatccccgtcaccaccggggcctggatgatgctccagcgcaac
ttgctctacacggcggtgaccagggcgaagaaactggtcgtcctcgtcgggtcccgcaag
gccctcggccaggcggtgcgtaccgtttccgcaggcaggaggtacacggcggtcgccgcc
aggctgtccggccggataccggtgggaaacatcacctag
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