Streptomyces nojiriensis: JYK04_04588
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Entry
JYK04_04588 CDS
T07326
Symbol
rhsC_2
Name
(GenBank) Putative deoxyribonuclease RhsC
Organism
snf
Streptomyces nojiriensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
T7SS_signal
DUF6531
RHS
Motif
Other DBs
NCBI-ProteinID:
QTI46750
LinkDB
All DBs
Position
complement(4890832..4895457)
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AA seq
1541 aa
AA seq
DB search
MGWRDFVPDSAEDWVEDRAKDVGDAIEWTGDKVADVAEEVGLDEAGDWVRDKSRSAANQL
GADVSELELGQTEDPNKLVYGSVSKIREQVSHLNDFKSSFTMVGNGLKGLEGDGLKGASA
DAFRESIAKEPPRWFKAAEAFGKAADAMGRFAETVEWAQGQAKEALADYNHAKKVSQDAR
TAYNKSITDYKAAVEAKKDTLPPRPADDFTDPGDPLIKAAQDKLDTARTQRNEVAETTRT
AVRAARDAAPPKPSYAEQLKDGMDYLDLAQTHLAGGVIKGTAGLVNFVRSVNPMDPYNLT
HPAEYLTSLNSTVAGLAVAVNDPMGAGKQMLDEFMKDPSEGIGKMLPELVGSKGLGALKK
TASIAKHADDLKGPGRTHLDNDGPDAPSRAPGDKTCVDDPVDVATGRMVLPQTDLVLPGS
LPLALTRTFESSYRAGRWFGPSWASSIDQRLEIDAAGVVLLGEDGSVLAYPHPAPGLPVL
PTHGRRWPLSATPDGGFTVCDPESGRVWHFTAEGTLVQLDDRNGGWIAYEYDADGAPTGI
SHSGGYGVRFTTADGRITSLLLADGTRVLDYGYTDGNLTEVVNSSGKPLRFGYDDQARIV
SWTDTNGRHFDYAYDDRDRCVAQSGTNGHVDSRFTYEDGVTTVTGALGHQRRYVIDEKAR
VVAETDANGATTHFAWDPFNRLLNRTDPLGLTTRIAYDDNGLVTSVERTDGRRTTLEYNA
LGLPERVTRPDGTSVRRTYDERGNPLTVRDASGAKSRFTYDERGHLASVTNALGDTTSFR
CNAAGLVEESADPLGAVTRYAYDAFGRAATITDPLGGVTRLTWSVEGRLQRRVEPDGSEQ
SWVYDGEGNCLSHTDAAGGRSVYEYGDFDSLVARTGPDGARYSFAHDLELRLTEVTGPQG
LTWTYEYDPAGRLTAETDFDGRTLGYAYDAAGRLSARTNALGETVRYEYNDLGQTVRKDA
AGAVTTYEYDYADQLAQAVGPDVTLSRIRNREGLLHSETVNGRTLSYAYDELGRTARRTT
PTGAVSEWSYDAAGRRASLTASGRTLAFEHDATGRETVRRIGGGVMLRHGFDEVGRLTEQ
HLTGHDGRTLQRRGYTYRPDGHLTAVDDALGGSRSFTLDGAARVTAVEAGAWSERYAYDE
AGNQTSASWPTAHPDADVAPGPRSYTGNRLTGAGGVHYAYDAQGRVVLRRKTRLSRKPDT
WHYAWDAEDRLVGVTTPDGTVWRYLYDPLGRRTAKQRLSAAGEVVEEVLFTWEGATLCEQ
ITRSDELPHPVALTWDHRGLHPLAQTERILTASREEIDSRFFSIVTDLVGTPTELVDERG
EIAWHTRSALWGATTWNRGASTYTPLRFPGQYFDPESGLHYNVFRTYDPETARYLSPDPL
GLAPAPNPATYVPNPHTWSDHLGLAPDECTVTVYRKQTEHPLSQRVHIDENGNVRIEGNN
HLYVNMSGDLRHTVEFRGDNGQIVAFDVPKSFVDEIRAKAVPQEQPDGFGFTKQEWKQVK
QIYPEISDPTRGTDLYGLPGEVIDKMRKVIIPGSGRIVQDH
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atgggctggcgggacttcgtaccggactcggcggaggactgggtcgaggaccgggccaag
gacgtcggcgacgcgatcgagtggaccggcgacaaggtcgccgacgtcgccgaggaggtc
ggtctcgacgaggcgggcgactgggtccgggacaagagccgctcggccgccaatcagctc
ggcgccgacgtatcggagctggagctcgggcagacggaggatccgaacaagctggtctac
ggcagcgtgtcgaagatccgcgagcaggtctcgcacctgaacgacttcaagtcctccttc
accatggtcggcaacggcctgaagggtctggagggcgacggtctgaagggcgcgtcggcg
gacgcgttccgggagtcgatagccaaggagccgccgcgctggttcaaggcggcggaggcc
ttcggcaaggccgccgacgcgatgggccgcttcgcagagaccgtcgagtgggctcagggc
caggccaaggaggccctggcggactacaaccacgccaagaaggtctcgcaggacgcgcgc
accgcctacaacaagtcgatcaccgactacaaggccgcggtcgaggcgaagaaggacacg
ctgccgccgcggcccgccgatgacttcaccgaccccggcgacccgctgatcaaggccgcc
caggacaagctcgacaccgcgcgcacccagcgcaacgaggtcgccgagacgacccgtacg
gcggtccgggcggcccgcgacgccgccccgcccaagccctcgtacgccgagcagctcaaa
gacggcatggactacctggacctcgcgcagacccacctcgcgggcggcgtgatcaagggc
accgcgggcctcgtcaacttcgtccgctcggtcaacccgatggacccgtacaacctgacc
caccccgccgagtacctgaccagcctcaactcgacggtcgccggcctggccgtggcggtc
aacgaccccatgggcgcgggcaagcagatgctcgacgagttcatgaaggaccccagcgag
ggcatcggcaagatgctccccgagctcgtcggctccaagggcctcggcgccctgaagaag
acggcatcgatcgccaagcacgccgacgacctcaagggaccgggtcgcacccacctcgac
aacgacggtcccgacgccccgtcgcgcgcccccggcgacaagacgtgcgtcgacgacccg
gtcgacgtcgcgaccggacggatggtcctgccgcagaccgacctcgtcctgccgggctcg
ctgccgctggccctcacccgcaccttcgagtcctcctaccgggcgggccgctggttcggc
ccgagctgggcgagcagcatcgaccagcgcctggagatcgacgccgccggtgtcgtcctc
ctgggcgaggacggcagcgtcctcgcctatccgcaccccgcaccggggctgccggtgctg
cccacacacggccggcgctggcccctgtccgccacaccggacggcgggttcacggtgtgc
gacccggaatcgggccgcgtctggcatttcaccgccgagggcacgctcgtccagctggac
gaccgcaacgggggctggatcgcctacgagtacgacgcggacggcgccccgacgggcatc
agccacagcggcggctacggggtgcggttcacgaccgccgacggccggatcacctcgctc
ctcctcgcggacgggaccagggtcctcgactacggctacaccgacggcaacctgaccgag
gtcgtcaactcctcgggcaagcccctgcggttcgggtacgacgatcaggcccggatcgtc
tcgtggaccgacaccaacggccgccacttcgactacgcgtacgacgaccgggaccgctgc
gtcgcccagtccggcacgaacgggcacgtggactcgcgcttcacctacgaggacggcgtc
accacggtcaccggcgctctcgggcaccagcgccgttacgtcatcgacgagaaggcccgg
gtcgtcgccgagaccgacgcgaacggcgccacgacccacttcgcgtgggatcccttcaac
cggctgctgaaccgcaccgatccgctgggcctgacgacgcggatcgcctacgacgacaac
gggctcgtcacctccgtcgaacgcacggacgggcgccgtacgaccctcgagtacaacgcc
ctcggcctgcccgaacgggtcacccggccggacggcacttccgtgcgccggacctacgac
gaacgcggcaaccccctcaccgtgcgggacgcctcgggcgcgaagtcccggttcacgtac
gacgaacggggccacctcgcctcggtgacgaacgcgctgggcgacaccacctccttccgc
tgcaacgcggcgggcctcgtcgaggaatcggccgacccgctgggcgcggtcacccggtac
gcctacgacgccttcggccgcgcggccacgatcaccgacccgctcggcggggtcacccgt
ctgacctggagcgtggagggccgcctgcagcgccgggtggagccggacggcagcgagcag
tcgtgggtgtacgacggcgaggggaactgcctcagccacaccgacgcggccggcggacgg
tcggtctacgagtacggcgacttcgactccctggtcgcgcgcaccggtcccgacggggcc
cgctactcgttcgcgcacgacctggagctgcggctgacggaggtcaccggcccgcagggg
ctgacctggacgtacgaatacgacccggcgggccggctgaccgccgagacggacttcgac
ggccggaccctcggctacgcgtacgacgcggcgggccggctgtccgcccggaccaacgcg
ctcggggagacggtccggtacgagtacaacgacctcggccagacggttcgcaaggacgcc
gccggcgcggtcaccacgtacgagtacgactacgcggaccagctggcacaggccgtcggc
ccggatgtgaccctgagccggatccgcaaccgcgagggcctgctgcactccgagacggtc
aacggccgcacgctcagctacgcgtacgacgagctgggccggacggcccggcgcaccacc
ccgaccggtgcggtcagcgagtggtcgtacgacgccgccggtcgccgcgcaagtctgacg
gcctccggccggaccctggccttcgagcacgatgcgacgggccgcgagacggtccgccgg
atcggcgggggcgtcatgctccggcacggcttcgacgaggtcgggcgcctcaccgagcag
cacctcacgggccacgacggccgcaccctgcagcgtcgcggctacacctaccggcccgac
ggccatctcaccgcggtggacgacgcgctgggcggctcccgctccttcaccctggacgga
gcagcccgtgtcaccgcggtggaggcgggggcgtggtccgagcgctacgcctacgacgag
gccggcaaccagacctccgcgtcctggcccaccgcccacccggacgccgacgtggcgccc
gggccgcgcagctacaccggcaaccgcctcacgggcgcgggaggcgtgcactacgcgtac
gacgcgcaggggcgtgtcgtgctgcgccggaagacccggctctcccgcaagccggacacc
tggcactacgcgtgggacgcggaggaccgcctggtgggggtcacgaccccggacggcacg
gtctggcgctacctgtacgacccgctgggccggcggaccgccaagcagcggctgtcggca
gccggtgaggtcgtggaagaggtcctcttcacctgggagggcgcaaccctctgcgagcag
atcacgcggtccgacgagctcccccacccggtggccctgacctgggaccatcgcgggctg
catccgctggcccagacggaacgcatcctgacggcctcgcgtgaggagatcgacagccgc
ttcttctcgatcgtcacggacctggtgggcacgcccaccgaactcgtggacgagcggggc
gagatcgcctggcacacccggtccgccctgtggggagcgacgacctggaaccgcggcgcg
tcgacgtacacgccgctgcgcttcccgggacagtacttcgaccccgaatcgggtctgcac
tacaacgtcttccgcacgtacgacccggagacggcgcggtacctcagcccggacccgctg
ggactcgccccggcgcccaacccggcgacgtacgttcccaacccccacacctggtcggac
cacctcggcctggctccggacgagtgcacggtcaccgtctaccgcaagcagaccgagcat
ccgctcagccagcgggtgcacatcgacgagaacggcaacgtccggatcgagggcaacaac
cacctgtacgtgaacatgagcggcgaccttcggcacaccgtggaattccggggggacaac
ggccagatcgtcgccttcgacgtaccgaagagttttgtggacgagatccgtgcgaaagcg
gtcccgcaggaacagccggacgggttcggcttcaccaaacaggaatggaaacaggtgaag
cagatctatcccgaaatatccgaccccaccaggggaacggacctgtacgggcttccgggt
gaagtgatcgacaaaatgagaaaagtcatcatacccggctctggtaggatcgtccaggac
cattag
DBGET
integrated database retrieval system
