Streptomyces nojiriensis: JYK04_04940
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Entry
JYK04_04940 CDS
T07326
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
snf
Streptomyces nojiriensis
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snf03016
]
JYK04_04940 (rtcB)
Enzymes [BR:
snf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JYK04_04940 (rtcB)
Transfer RNA biogenesis [BR:
snf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JYK04_04940 (rtcB)
Prokaryotic type
tRNA splicing ligases
JYK04_04940 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTI47095
LinkDB
All DBs
Position
5258573..5259766
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AA seq
397 aa
AA seq
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MSYVEVSGEKIPIRMWADPASVEDSAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMKDAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSGLRSKIERAIPVGAGMHREALDPS
RLYGFSVEGYEGLWSRFDYLADSVKFRHERAMKQIGTLGQGNHFIEFCLDQSDSVWLMLH
SGSRGIGNQLAAHHIEVARGLDHNQNLVDRDLAVFLAATPEMAAYRNDLFWAQEYAKYNR
AAMMSLFKEVVRKEFRKAKVSFDREISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRKMSRTAAKKRFSARDLAEQTKGVECRKDSG
VVDEIPGAYKSIEQVIDQQTDLVQVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagaggtgtccggggagaagatcccgatccggatgtgggccgacccggcg
tcggtcgaggacagtgcgatgcagcagctgcgcaacgtcgccaccctcccctggatcaag
ggtctggccgtcatgccggacgtccactacggcaagggagccaccgtcggctcggtgatc
gccatgaaggacgcggtctgcccggcggcggtcggcgtggacatcggctgcggaatgtcg
gcggtgaagacgtccctgacggcgaacgacctgccgggggacctgtcggggctgcggtcg
aagatcgagcgggcgattccggtgggggcggggatgcaccgggaggcgctggacccgtcg
cggctgtacgggttctcggtggaggggtacgagggcctctggagccggttcgactacctc
gctgattcggtcaaattccgtcatgaacgtgccatgaagcagattggaacgctcggacaa
ggcaaccacttcatcgaattttgtctcgatcagtcagattcggtctggttgatgctgcac
tccggctcccgcggcatcggcaaccagctcgcggcgcaccacatcgaggtggcccggggg
ctcgaccacaaccagaacctggtcgaccgggacctggcggtcttcctcgcggccacgccc
gagatggcggcgtaccgcaacgacctcttctgggcgcaggagtacgcgaagtacaaccgc
gccgcgatgatgagcctcttcaaggaggtcgtccgcaaggagttccggaaggcgaaggtc
tccttcgaccgcgagatcagctgccaccacaactacgtggcggaggagcggtacgacggc
atggacctgctggtcacgcgtaagggcgcgatccgcgccggcagcggtgactacgggatc
atcccgggctccatgggcacgggctcgtacatcgtgaaggggctcggcaacgagaagtcc
ttcaactcggcctcgcacggcgcgggccggaagatgagccggacggcggcgaagaagcgg
ttctcggcacgtgacctcgcggagcagaccaagggcgtggagtgccgcaaggactcgggc
gtcgtggacgagatcccgggtgcgtacaagtccatcgagcaggtcatcgaccagcagacc
gacctggtgcaggtcgtggccaagctcaagcaggtcatctgcgtcaagggctga
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