Streptomyces nojiriensis: JYK04_05544
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Entry
JYK04_05544 CDS
T07326
Symbol
uvrD2_1
Name
(GenBank) ATP-dependent DNA helicase UvrD2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf03420
Nucleotide excision repair
snf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JYK04_05544 (uvrD2_1)
03430 Mismatch repair
JYK04_05544 (uvrD2_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snf03400
]
JYK04_05544 (uvrD2_1)
Enzymes [BR:
snf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYK04_05544 (uvrD2_1)
DNA repair and recombination proteins [BR:
snf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYK04_05544 (uvrD2_1)
MMR (mismatch excision repair)
Other MMR factors
JYK04_05544 (uvrD2_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
HRDC
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QTI47695
LinkDB
All DBs
Position
5887175..5889349
Genome browser
AA seq
724 aa
AA seq
DB search
MTAATHSSSFPGGPASADSADAVLLGLDPEQREVATTLRGPVCVLAGAGTGKTRAITHRI
AYGVRSGQLMPASVLAVTFTNRAAGEMRGRLRTLGAGGVQARTFHSAALRQLQYFWPKAV
GGEVPRLLERKIQFVAEAGARCRIRLDRNELRDVTGEIEWAKVTQTVPADYPVAALKSGR
EAPRDLAEIAQIYGTYEQLKRDRGMIDFEDVLLLTVGILQDRHDIAEQIRTQYQHFVVDE
YQDVSPLQQRLLDLWLGERDSLCVVGDASQTIYSFTGATPDHLLNFRTRYPQATVVKLVR
DYRSTPQVVHLANGLLNQAKGRAAEHRLELISQRETGPDPVYAEYADEPAEAEGVARRIR
DLIAAGVPAGEIAVLYRINAQSEVYEQALADAGVPYQLRGAERFFERQEVQKAILALRGA
ARSGGNDPLLDDVVELGSQVRAVLSSTGWGTEPPAGSGAVRDQWESLAALVRLAEDFARS
RPGATLADLTIELEERKAAQHAPTVQGVTLASLHAAKGLEWDAVFLVGLTDGMIPITYAK
TDEQVEEERRLLYVGVTRARIHLNLSWAVSRAPGGRASRRPSRFLNGLRPGSAAPGATAG
SAAERGVRGRVRRGPVLCRVCGKTLTEAGELKLMRCEDCPSDMDEGLYERLRDWRAAQSK
EQGLPAYCVFTDKTLMAIAEAAPAEEGELSMISGVGGRKLDRYGADVLAICAGQEVAAGH
PDDA
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcagcaacgcactcctcatcgttcccgggtggccccgcctccgccgactcggcc
gacgcggtgctcctgggcctcgacccggagcagcgcgaggtcgcgacgaccctgcgcggg
ccggtgtgcgtgctggcgggtgccggtaccggcaagacccgcgcgatcacccaccggatc
gcctacggcgtccggtcggggcagctcatgccggccagtgtgctcgccgtcaccttcacc
aaccgcgccgcgggtgagatgcgcggacgtctgcgcaccctgggagcgggcggggtccag
gcccgcaccttccactccgccgccctgcgccagctccagtacttctggccgaaggcggtc
ggcggggaggtgccccggctgctggagcgcaagatccagttcgtggccgaggccggcgcg
cgctgccggatccgtctcgaccgcaacgagctgcgcgacgtcaccggcgagatcgaatgg
gcgaaggtcacccagaccgtgcccgccgactacccggtggccgccctcaagtcgggccgc
gaggccccccgcgacctcgccgagatcgcccagatctacgggacgtacgaacagctcaag
cgcgaccgcggcatgatcgacttcgaggacgtgctgctcctgaccgtcggcatcctccag
gaccgccacgacatcgccgagcagatccgcacccagtaccagcacttcgtcgtcgacgag
taccaggacgtcagcccgctccagcagcggctgctggacctgtggctcggcgagcgcgac
agcctctgcgtcgtcggtgacgccagccagaccatctactccttcaccggcgccaccccc
gaccacctgctgaacttccgcacccgctacccgcaggccacggtggtcaagctggtccgc
gactaccgctccaccccccaggtggtccatctggccaacgggctcctgaaccaggccaag
ggccgcgccgccgagcaccgcctggagctgatctcgcagcgcgagaccggccccgacccc
gtctacgccgagtacgcggacgagcccgccgaggccgagggcgtcgcccgccggatccgc
gacctgatcgccgcgggtgttccggcgggcgagatcgccgtgctctaccgcatcaacgcc
cagtccgaggtctacgagcaggccctcgccgacgccggggtcccctaccagctgcgcgga
gccgagcggttcttcgagcgccaggaggtccagaaggcgatcctcgcgctgcgcggagcc
gcccgctccggcgggaacgacccgctgctcgacgacgtcgtggagctgggctcccaggtc
cgggcggtgctcagctccaccggctggggcaccgagccgcccgccggctccggcgccgtg
cgcgaccagtgggaatcgctggccgcactggtccggctcgccgaggacttcgcccggtcc
cggcccggggccacgctggcggacctcacgatcgagctggaggagcgcaaggcggcccag
cacgccccgaccgtccagggcgtcacgctggcctcgctgcacgcggcgaagggcctggag
tgggatgccgtgttcctcgtcggcctcaccgacggcatgatcccgatcacctatgcgaag
accgacgagcaggtcgaggaggaacggcggctgctctacgtcggcgtcacccgggcacgg
atccacctgaacctgtcgtgggcggtctcccgcgcccccggtggccgggcctccaggcgc
cccagccgcttcctcaacggcctgcggccgggctccgcggccccgggggccacagcgggc
tccgcggccgagcgaggggtgcgggggcgcgtgcgccgcggtcctgtgctgtgccgggtc
tgcggcaagaccctgaccgaggccggcgagctgaaactgatgcgctgtgaggactgcccg
tccgacatggacgaaggcctctacgagcgactgcgggactggcgtgcggcccagtcgaag
gagcaaggactgcccgcctactgcgtcttcacggacaagacgctgatggccatcgcggag
gccgcgccggccgaggagggggagctgtcgatgatctccggagtgggcggccgtaagctt
gaccggtacggagccgatgtcctggccatctgcgcaggtcaagaggttgcggccgggcat
cctgacgacgcgtag
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