Streptomyces nojiriensis: JYK04_06133
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Entry
JYK04_06133 CDS
T07326
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYK04_06133 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snf03019
]
JYK04_06133 (pnp)
03016 Transfer RNA biogenesis [BR:
snf03016
]
JYK04_06133 (pnp)
Enzymes [BR:
snf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
JYK04_06133 (pnp)
Messenger RNA biogenesis [BR:
snf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JYK04_06133 (pnp)
Transfer RNA biogenesis [BR:
snf03016
]
Prokaryotic type
tRNA degradation factors
JYK04_06133 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_PNO1_2nd
KH_2
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
QTI48273
LinkDB
All DBs
Position
6535314..6537551
Genome browser
AA seq
745 aa
AA seq
DB search
MEKTLVENETHYAEAVIDNGSFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASK
KPKDQLDFFPLTVDVEERQYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLR
NEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHT
ELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIALVKGGAEAPTEEIVASGLDAAKPF
IKVLCKAQADLAAKAAKPEGEFPVFLDYQDDVYEALAAAVKGDLSQALTIAGKQDREAEL
DRVKEIAAEKLLPAFEGREKEISAAYRSLTKALVRERVIKDKVRIDGRGLTDIRTLAAEV
EAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETG
RVGSPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLL
NAGVPLKAPVAGIAMGLISQEIDGKTHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQL
DTKLDGIPASVLAAALKQARDARLHILDVMMEAIDTPDAMSPFAPRIITVKIPVDKIGEV
IGPKGKMINQIQEDTGAEITIEDDGTIYIGAADGPAAEAARATINSIANPTMPEVGERYL
GTVVKTTTFGAFVSLMPGKDGLLHISQIRKLAGGKRVENVEDVLAVGTKVQVEIAEIDQR
GKLSLIPVIDGEAAGDDADKDDSDK
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaacgctagtggagaacgagacccactacgccgaggccgtcattgacaacggt
tccttcggcacccgcaccatccgcttcgagacgggccgtctggcccgccaggccgccggc
tccgccgttgcctacctggacgacgacacgatggtgctgtccgccaccaccgcgtcgaag
aagcccaaggaccagctcgacttcttccccctgacggtggacgtcgaggagcggcagtac
gcggccggcaagatccccggctccttcttccgccgtgagggccgcccctccgaggacgcg
atcctcacctgccgcctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgc
aacgagatccaggtcgtcgccacgatcatggcgctcaaccccgaccacctgtacgacgtc
gtcgcgatcaacgccgcgtccgcgtccacccagctggccggcctgcccttctccggcccg
atcggcggcgtccgcgtcgcgctgatccgcggccagtgggtggccttcccgacgcacacc
gagctcgaggacgccgtcttcgacatggtcgtcgcgggccgcgtcctggaggacggcgac
gtcgcgatcatgatggtcgaggccgaggccaccgagaagaccatcgccctcgtcaagggc
ggcgccgaggcgccgaccgaggagatcgtggcctccggcctcgacgccgcgaagcccttc
atcaaggtcctctgcaaggcccaggccgacctggccgccaaggccgcgaagcccgagggc
gagttcccggtcttcctggactaccaggacgacgtgtacgaggccctcgcggccgccgtc
aagggtgacctctcccaggcgctgaccatcgcgggcaagcaggaccgcgaggccgagctg
gaccgcgtcaaggagatcgccgccgagaagctcctcccggccttcgagggccgcgagaag
gagatctccgccgcctaccgcagcctgaccaaggccctggtccgcgagcgcgtcatcaag
gacaaggtccgcatcgacggccgcgggctcacggacatccgtaccctcgccgccgaggtc
gaggccatcccgcgcgtgcacggctcggcgctgttcgagcgtggcgagacccagatcctg
ggcgtcaccaccctcaacatgctccgcatggagcagcagctggacaccctctccccggtg
acccgcaagcgctacatgcacaactacaacttcccgccgtactccgtcggcgagaccggc
cgcgtcggttcgccgaagcgccgcgagatcggccacggcgcgctcgccgagcgcgcgatc
gtgccggtcctcccgacccgcgaggagttcccctacgcgatccgccaggtgtccgaggcc
ctcggctccaacggttcgacgtccatgggctcggtctgcgcctccaccatgtcgctgctg
aacgccggtgtgcccctcaaggcccccgtcgccggtatcgccatgggcctgatctcccag
gagatcgacggcaagacccactacgtcgccctcaccgacatcctcggtgcggaggacgcc
ttcggcgacatggacttcaaggtcgccggcaccaaggagttcgtcaccgcgctccagctg
gacaccaagctcgacggcatcccggcctccgtcctggccgcggccctcaagcaggcccgc
gacgcccgcctccacatcctcgacgtgatgatggaagcgatcgacacgccggacgcgatg
tccccgttcgccccgcggatcatcaccgtcaagatcccggtggacaagatcggtgaggtc
atcggccccaagggcaagatgatcaaccagatccaggaggacaccggcgccgagatcacg
atcgaggacgacggcaccatctacatcggtgccgccgacggcccggccgccgaggccgcc
cgcgccacgatcaactcgatcgccaacccgaccatgccggaggtcggcgagcgctacctg
ggtacggtcgtcaagaccaccaccttcggtgccttcgtctccctgatgcccggcaaggac
ggcctgctgcacatctcgcagatccgcaagctcgccggtggcaagcgcgtggagaacgtc
gaggacgtgctcgcggtcggcaccaaggtccaggtggagatcgccgagatcgaccagcgc
ggcaagctctccctgatccccgtgatcgacggcgaggccgccggtgacgacgctgacaag
gacgactccgacaagtga
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