KEGG   Streptomyces nojiriensis: JYK04_06160
Entry
JYK04_06160       CDS       T07326                                 
Symbol
helY_3
Name
(GenBank) putative helicase HelY
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
snf  Streptomyces nojiriensis
Brite
KEGG Orthology (KO) [BR:snf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:snf03400]
    JYK04_06160 (helY_3)
Enzymes [BR:snf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     JYK04_06160 (helY_3)
    5.6.2.6  RNA 3'-5' helicase
     JYK04_06160 (helY_3)
DNA repair and recombination proteins [BR:snf03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    JYK04_06160 (helY_3)
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr WHD_2nd_Lhr WHD_4th_Lhr DEAD WHD_3rd_Lhr Helicase_C ResIII AbiEi_4 DUF6406 AAA_25 PhoH
Other DBs
NCBI-ProteinID: QTI48296
LinkDB
Position
complement(6571407..6575996)
AA seq 1529 aa
MAGAALDSFSPATRSWFTGAFVTPTDAQEGAWRAIGEGSDVLVVAPTGSGKTLAAFLAAL
DRLASTPPPAESKKRCRVLYVSPLKALAVDVERNLRSPLTGIRQESVRLGLPEPDIRVGI
RSGDTPPAERRALATRPPDILITTPESLFLMLTSAAREALTGIETVILDEVHAVAGTKRG
AHLALSLERLDELLPRPARRIGLSATVRPVDEVARYLAPRGKVEIVQPPSAKEFDLSVVV
PVQDMGELGGSPATEGKEGGDKPSIWPHVEERIADLVQAHRSTIVFANSRRLAERLCNRL
NEIAYERAVGEKLPEGAPPAEIMAQSGAARGAPPLLARAHHGSVSKEQRALVEEDLKAGR
LPAVVATSSLELGIDMGAVDLVVQVESPPSVASGLQRVGRAGHQVGAVSTGVVFPKYRGD
LVQAAVVTERMRTGAIESLRVPSNPLDVLAQQLVAMVAMDTWQLDDLLALVRRAAPFAAL
PESAFTAVLDMLAGRYPSDAFAELRPRVVWDRAAGTVTGRPGAQRLAVTSGGTIPDRGLF
GVFLAGSDPKKGGGRVGELDEEMVYESRVGDVFTLGTTSWRIEDITRDRVLVTPAPGVPG
RLPFWKGDQLGRPLELGRAVGAFLRELGGLGEEDARLRLLAAGLDAWAAENVLAYLAEQR
EACGHVPDDRTIVVERFRDELGDWRVVVHSPFGAQVHAPWALALGARLAEKYGMDAQVMH
ADDGIVLRLPDADLLSMDLLDHDPAAAHGFEFDDEKAPLGAADVAFDHGDINQLVTDQVG
GSALFASRFRECAARALLLPRRSPGRRTPLWQQRQRASQLLQVASEFGSFPIVLEAVREC
LQDVFDVPGLTELMGDIEARRVRLVEVTTPEPSPFARSLLFGYVAQFLYEGDSPLAERRA
AALSLDSRLLAELLGQAELRELLDAQVLEELERELQWLTEDRRAKDPESVADLLRLLGPL
TQDQLTERGADPAWARELAAARRAIAVRIGGADHWAAIEDAGRLRDALGTALPVGVPEAF
TEPVKDPLGDLLARYARTHGPFTTAAVAARFGLGAAVTEGALHRLAAAGRVVQGEFHPAG
IGQEWCDATVLRRLRRRSLAALRQELEPVPPTSLATFLPQWQHLGGALRGLDGLARAVEQ
LQGAPVPASALERLILPSRVSGYSPGLLDELTTAGEVVWAGAGALPGKDGWISLYLADAA
PMLLPPPHPLEQSPLHQAVLASLAGGYGLFFRQIAQSIRGEFPEVSDVALSEAVWDLAWS
GRLTNDTLAPLRSLLGSGRTAGSTAHRARRTVPRGRYGTLSATVSRTGPPTVSGRWSLLP
AAAPDPTHRAHALARTLLDRHGVVTRGAVAAEGVEGGFSAVYRVLSAFEDSGQARRGYVV
EGLGAAQFAMDGAVDRLRAAERTPPPLAAVVLAAADPANAYGAALPWPEPPAGATHKPGR
KAGSLVVLVDGELVLYLERGGKTLLAWPAPEDPRLAAATAALAGASRAGTLPALTVERIN
AAAALTSPLGPALEAAGFHATPRGLRLRS
NT seq 4590 nt   +upstreamnt  +downstreamnt
atggcaggcgctgcgctcgactcgttctcccccgcgacccgctcgtggttcacgggggcc
ttcgtcacgcccaccgacgcacaggagggcgcctggcgggcgatcggggagggctcggac
gtgctggtggtggcccccaccggctccggcaagaccctggccgcgttcctcgccgccctc
gaccggctcgcgtcgaccccgccgcccgccgagtcgaagaagcgctgccgcgtgctgtac
gtatcgcccttgaaggccctggccgtcgacgtggagcgcaatctgcgcagcccgctgacc
gggatccgccaggagtcggtccgcctgggcctgcccgagccggacatccgggtcgggatc
cgctccggcgacaccccgcccgccgagcggcgggcgctggccacccgcccgccggacatc
ctcatcaccacgcccgagtccctgttcctgatgctgacctcggcggcccgggaggccctg
accgggatcgagacggtgatcctggacgaggtccacgcggtcgcggggaccaagcgcggc
gcccatctcgccctctccctggagcggctggacgagctgctgccccgccccgcgcgccgg
atcgggctgtcggcgacggtgcggccggtggacgaggtggcccggtacctggcgccgcgc
ggcaaggtggagatcgtccagccgccttcggccaaggagttcgacctgtcggtggtcgtt
ccggtgcaggacatgggcgagttgggcggctcccccgcgaccgagggcaaggagggcggg
gacaagccgtcgatctggccgcacgtggaggagcggatcgccgacctggtgcaggcgcac
cgctcgacgatcgtgttcgccaactcccgccgcctcgccgagcggttgtgcaaccggctc
aacgagatcgcgtacgagcgcgccgtgggcgagaagctgccggagggtgcgcccccggcc
gagatcatggcccagtcgggcgccgcccggggggccccgccgctgctggcgcgcgcgcac
cacggctcggtgtccaaggagcagcgggcgctggtggaggaggacctgaaggcgggccgg
ctgcccgccgtggtcgccacctccagcctggagctgggcatcgacatgggcgcggtggac
ctggtggtgcaggtggagtcgccgccctcggtggcctcggggctgcagcgggtgggccgg
gccgggcaccaggtgggcgcggtctccaccggcgtggtcttccccaagtaccgcggcgac
ctggtgcaggcggcggtggtcaccgagcggatgcgcacgggggccatcgagtcgctgcgg
gtgccctccaaccccctggacgtactggcgcagcagctggtcgcgatggtcgcgatggac
acctggcagctggacgacctgctcgccctggtgcggcgggcggcgcccttcgcggcgctg
ccggagtcggcgttcacggcggtgctggacatgctggcggggcgctatccgtcggacgcg
ttcgccgagctccggccgcgcgtggtctgggaccgggcggcggggacggtcacgggccgg
ccgggtgcccagcgcctcgcggtcacctcgggcggcacgatccccgaccgcggtctcttc
ggcgtcttcctcgcgggctccgaccccaagaagggcggcggccgggtcggggagctcgac
gaggagatggtctacgagtcccgcgtcggggacgtcttcaccctgggcaccacctcgtgg
cggatcgaggacatcacccgcgaccgggtcctggtcacccccgcccccggggtcccgggc
cggctgccgttctggaagggcgaccagctcggccggccgctcgaactgggccgcgcggtc
ggcgcgttcctccgcgagctcggcggcctgggcgaggaggacgcccggctgcggctgctg
gcggcgggcctggacgcctgggccgccgagaacgtgctggcgtacctcgccgaacagcgc
gaggcctgcggtcacgtccccgacgaccggaccatcgtggtcgagcggttccgcgacgaa
ctgggcgactggcgggtcgtggtccactcacctttcggcgcgcaggtgcacgccccgtgg
gcgctggcgctgggggcccgcctcgccgagaagtacggcatggacgcgcaggtgatgcac
gccgacgacgggatcgtgctccgcctgcccgacgcggacctgctctcgatggacctcctg
gaccacgacccggccgccgcgcacgggttcgagttcgacgacgagaaggccccgctgggc
gcggccgatgtcgccttcgaccacggcgacatcaaccagctcgtcaccgaccaggtcggc
ggctccgcgctgttcgcctcccggttccgcgagtgcgcggcccgcgccctgctgctgccg
cgccggagccccggccggcgcaccccgctgtggcagcagcgccagcgcgcctcccagctg
ctccaggtggcctcggagttcggctccttcccgatcgtgctggaagccgtacgggagtgc
ctccaggacgtcttcgacgtgcccggcctgaccgagctgatgggggacatcgaggcgcgc
cgcgtgcggctggtcgaggtgaccaccccggagccctcccccttcgcccgttccctcctc
ttcgggtacgtggcccagttcctctacgagggcgactcgccgctggccgagcgccgggcg
gccgcgctgtcgctggactcccggctgctggccgagctgctcggccaggcggagctgcgc
gaactcctcgacgcgcaggtgctggaggagctggagcgggagctccagtggctcacggag
gaccggcgggccaaggatcccgagtcggtggccgacctgctgcgcctgctgggcccgctg
acgcaggaccagttgaccgagcgcggggcggatccggcgtgggcccgcgagctcgccgcg
gcccgccgcgccatcgcggtcaggatcggcggcgcggaccactgggctgcgatcgaggac
gcgggccggctgcgggacgcgctgggcacagccctgcccgtcggtgtcccggaggcgttc
accgaaccggtcaaggacccgctcggggacctgctggcccggtacgcccgcacccacggg
cccttcaccacggccgccgtcgccgcccgcttcggcctgggcgcggcggtgaccgagggc
gccctgcaccggctggccgcggccggccgggtggtgcagggcgagttccacccggcgggc
atcggccaggagtggtgcgacgcgacggtgttgcgcaggctccgccgccgctccctcgcc
gcgctccgccaggagctggaaccggtgccgccgacctcgctggccaccttcctcccccag
tggcagcacctgggcggcgccctgcgcggcctcgacgggctggcccgggcggtggagcag
ctccagggcgccccggtgccggcctccgcgctggaacgcctgatcctcccgtcgcgggtg
agcgggtactccccgggcctgctggacgagctgaccaccgcgggcgaggtggtgtgggcg
ggcgcgggtgccctcccgggcaaggacggctggatctccctctacctggcggacgcggcc
ccgatgctgctgcccccgccgcacccgctggagcagagccccctccaccaggcggtcctg
gcgtcgctggcgggcgggtacggcctgttcttccggcagatcgcgcagtcgatccgcggc
gagttccccgaggtgtccgacgtcgcgctctccgaggccgtatgggatctggcctggtcg
ggccggctcaccaacgacaccctggccccgttgcgctcactgctcggttcgggccgcacg
gccggctcgacggcgcaccgggcccggcgcaccgtcccccgcggccggtacggcacgctc
agcgcgaccgtgtcccgtaccggcccgcccaccgtctccgggcgctggtccctgctgccg
gccgcggcccccgacccgacgcaccgggcccacgccctggcccgcaccctgctggaccgg
cacggggtggtgacccgcggggcggtcgccgcggaaggggtggagggcggcttcagcgcg
gtctaccgcgtcctgtcggccttcgaggacagcggccaggcccgccggggctatgtggtc
gaggggctgggcgcggcccagttcgctatggacggcgcggtggaccggctccgggccgcc
gaacggacgccgcccccgctggcggcggtggtgctggcggccgccgacccggcaaacgcg
tacggcgcggccctgccctggcccgagcccccggccggggccacccacaagccgggccgc
aaagcgggctccctggtggtcctggtcgacggggagctcgtcctctacctggagcgcggc
ggcaagaccctgctggcctggcccgccccggaggacccccggctcgcggcggccacggcc
gccctggcgggcgcctcccgcgcgggcacgctcccggccctcacggtggaacggatcaac
gcggcggcagccctgacctcccccctgggaccggccctggaggcggccggcttccacgcc
acgccgagggggttgcgcctgcgctcctga

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