Streptomyces nojiriensis: JYK04_06223
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Entry
JYK04_06223 CDS
T07326
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYK04_06223 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snf03019
]
JYK04_06223 (recQ_1)
03400 DNA repair and recombination proteins [BR:
snf03400
]
JYK04_06223 (recQ_1)
Enzymes [BR:
snf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYK04_06223 (recQ_1)
Messenger RNA biogenesis [BR:
snf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYK04_06223 (recQ_1)
DNA repair and recombination proteins [BR:
snf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JYK04_06223 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
KORA
Motif
Other DBs
NCBI-ProteinID:
QTI48359
LinkDB
All DBs
Position
complement(6646515..6648674)
Genome browser
AA seq
719 aa
AA seq
DB search
MNADLRSSADSVLARLVGDPTGAARLREDQWRAIEALVAHKRRALVVQRTGWGKSAVYFV
ATSLLRANGAGPTVIVSPLLALMRNQVEAAARAGIRARTINSANPEEWEGIQAEVAAGEV
DVLLVSPERLNNPDFRDQVLPKLSAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADLP
PGVPVLATTATANARVTADVAEQLGTGAGTDALVLRGPLDRESLSLAVLTLPDAAHRLAW
LADHLGELPGSGIIYTLTVAAAEEVTTYLRHRGHTVASYTGKTENADRQQAEDDLQANRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGREDEAI
WQYFASVAFPPEEQVRRTLDVLARAGRPLSLPAMEPLVDLRRTRLETMLKVLDVDGAVHR
VKGGWTSTGEPWAYDAERYAWVARQRATEQQAMRDYAAATGCRMEFLRRQLDDEEAAPCG
RCDNCAGARFTAEVSTTALDTARGELGRPGVELEPRKMWPTGLAAVGVDLKGRIPAGEQA
STGRALGRLSDIGWGNRLRPMLAPQAPDQPVPDDVAQAVVAVLADWARGPGGWASGAPDA
PARPVGVVALPSRSHPQLIGSLAARIAEIGRMPLLGALAYTDQAPEFGSMSSNSAQRVRG
LHQALTVPPALADALERSAGPVLLVDDRTESGWTIAVAARLLRRAGAKEVFPLVLALQG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagacctgaggtcctcggccgactccgtactagcccgtctcgtgggcgatccc
acgggtgccgccaggctgcgcgaggaccagtggcgggcgatcgaggccctcgtggcgcac
aagcggcgggcgctggtggttcagcgcaccggctggggcaagtccgcggtgtacttcgtc
gccacctcgctgctgcgggcgaacggcgcaggccccaccgtgatcgtctcgccgctcctc
gcactgatgcgcaatcaggtcgaggccgcggcccgggccgggatccgcgcccgcaccatc
aactccgccaaccccgaggagtgggagggcatccaggccgaggtggcggcgggtgaggtc
gatgtcctgctggtgagtccggagcggctcaacaaccctgatttccgcgaccaggtcctc
cccaagctctccgccgccaccgggctgctcgtggtcgacgaggcgcactgcatctccgac
tgggggcacgacttccgccccgactaccgccggctgcgcaccatgctggccgacctgccg
ccgggtgtcccggtgctcgcgacgaccgccacggccaatgcccgcgtgactgccgacgtc
gccgaacagctcggcaccggggccggcacggacgctctggtgctgcgcggcccgctggac
cgcgagagcctgagcctggccgtcctgaccctgcccgacgcggcgcaccggctggcctgg
ctcgccgaccacctcggggaactgcccggctccgggatcatctacacgctgaccgtggcg
gccgccgaggaggtcacaacgtacctgcgccaccgggggcacacggtggcctcgtacacc
ggcaagacggagaacgccgaccgccagcaggccgaggacgacctccaggcgaaccgggtc
aaggcgctcgtggccacctccgccctcgggatgggcttcgacaagcccgacctgggcttc
gtggtgcacctcggctcgccctcctcccccatcgcctactaccagcaggtcggccgcgcg
ggccgtggcgtggagcacgcggaggtcctgctgctgcccggccgggaggacgaagcgatc
tggcagtacttcgcctcggtggccttcccgccggaggagcaggtgcgccgcaccctcgac
gtcctggcccgggccggccggccgctgtcgctgcccgccatggaaccgctggtcgatctg
cgccgcacccggctggagaccatgctcaaggtgctcgacgtcgacggcgccgtgcaccgc
gtcaagggcggctggacctcgacgggcgagccctgggcctacgacgccgagcgctacgcg
tgggtcgcccgccagcgggccacggaacagcaggcgatgcgcgactacgccgcggccacc
ggatgccggatggagttcctgcgccgccagctcgacgacgaggaggcggcgccctgcggc
cgctgcgacaactgcgccggggcccggttcaccgcggaggtctccaccaccgcgctggac
accgcgcgcggtgaactcggccgcccgggcgtggagctggagccgcgcaagatgtggccg
accgggctcgcggcggtcggcgtcgacctcaaggggcgcatccccgccggggagcaggcc
tcgacgggccgggcgctgggccggctgtccgacatcggatggggcaaccggctgcgcccg
atgctggcgccgcaagctccggaccagccggttccggacgacgtcgcgcaggccgtggtc
gcggtgctcgccgactgggcccggggcccaggcggctgggcctcgggagcaccggacgca
ccggcacggccggtgggcgtggtcgccctgccctcgcgcagccacccccagctgatcggt
tcactggccgcgcggatcgcggagatcgggcggatgccgctgctcggcgcgctcgcctac
acggaccaggccccggagttcggatcgatgtcctcgaacagcgcacagcgcgtacgggga
ctccaccaggccctcaccgtgcccccggcgctggccgacgcgctggaacggtccgccggc
ccggtgctgctcgtcgacgaccgcacggagagcgggtggaccatcgcggtggccgcccgg
ttgctgcgacgggcaggcgcgaaagaggtgttcccgctggtgctggcgcttcagggctag
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