Streptomyces nojiriensis: JYK04_06743
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Entry
JYK04_06743 CDS
T07326
Symbol
alkA_2
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
snf
Streptomyces nojiriensis
Pathway
snf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYK04_06743 (alkA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snf03000
]
JYK04_06743 (alkA_2)
03400 DNA repair and recombination proteins [BR:
snf03400
]
JYK04_06743 (alkA_2)
Enzymes [BR:
snf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
JYK04_06743 (alkA_2)
Transcription factors [BR:
snf03000
]
Prokaryotic type
Helix-turn-helix
AraC family
JYK04_06743 (alkA_2)
DNA repair and recombination proteins [BR:
snf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JYK04_06743 (alkA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
DUF6233
Motif
Other DBs
NCBI-ProteinID:
QTI48876
LinkDB
All DBs
Position
complement(7258123..7259607)
Genome browser
AA seq
494 aa
AA seq
DB search
MHTDTERCVRAVQSKDARFDGWFFTAVLTTRIYCRPSCPAVPPKVENMTFLPSAAACQQA
GFRACKRCRPDTSPGSPEWNARADAVARAMRLIQDGVVDREGVPGLATRLGYSARQVERQ
LNAELGAGPLALARAQRAQTARLLIETSELPMGDVAFAAGFSSIRTFNDTVREVFALSPS
ELRERAVKAGRSRNAPPRIPGTISLRLPFRAPLNPDNLFGHLAATAVPGVEEWRDGAYRR
TLRLPYGTGVVALTPQPDHIGCRLALTDLRDLTIAISRCRWMLDLDADPEAVDEQLRSDP
LLAPLVDKAPGRRVPRTVDAPEFAVRAVLGQQVSTAAARTHAARLVTAHGEPVEDPLGGL
THLFPSPQALAGLDPAALALPRSRRATLTTLVSALADGSLALGFDSDWEAARAQLTALPG
FGPWTTEVIAMRALGDPDAFLPSDLGIRRAAQGLGLPSTPSALTARAAAWRPWRAYAVQY
LWATDAHPINHLPA
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccgacaccgagcgctgcgtaagggccgtgcagtcgaaggacgcccgcttcgac
ggctggttcttcaccgcggtcctgaccacccggatctactgcaggcccagctgtcccgcg
gtgccgcccaaggtcgagaacatgaccttcctgcccagcgcagccgcctgccagcaggcc
gggttccgggcctgcaagcggtgccggcccgatacgagtcccggttcccccgagtggaac
gcgcgggccgacgccgtcgcacgcgcgatgcggctgatccaggacggggtggtggaccgg
gagggcgtgccgggcctggccacccggctgggctactcggcccgccaggtcgagcggcag
ctgaacgccgagctcggggccggtccgctggccctggcacgggcccagcgcgctcagacc
gcccggctgctcatcgagacctccgagctcccgatgggcgatgtggccttcgccgccggg
ttctcctccatccggaccttcaacgacacggtccgcgaggtcttcgccctgtccccgagc
gagctgcgggagcgggccgtcaaggccggccgcagcaggaacgccccgccccggatcccg
gggacgatcagtctgcggctgccgttccgggccccgctgaaccccgacaacctcttcggg
cacctcgccgcgaccgccgtccccggggtcgaggagtggcgtgacggcgcctaccgccgc
accctgcgcctgccctacggcaccggtgtcgtcgccctgaccccgcagcccgaccacatc
ggctgccggctcgccctgaccgacctgcgcgacctcaccatcgccatcagccgctgccgc
tggatgctcgacctggacgccgaccccgaggccgtcgacgagcagctgcgctccgatccg
ctgctggccccgctcgtggacaaggctcccgggcgccgggtaccccgtacggtcgacgcg
ccggagttcgccgtacgggcggtgctgggccagcaggtctccaccgcggcggcgcgcacg
cacgcggcccggctggtcaccgcgcacggggagccggtcgaggacccgctgggcgggctg
acgcacctcttcccctccccgcaggcgctcgccgggctggatccggcggcactggccctg
ccgcgcagccggcgggccacgctgaccacgctggtctcggcgctcgccgacggctcgctg
gcgctcggcttcgacagcgactgggaggcggcgcgggcccagctgacggcgctgcccggc
ttcggcccgtggaccaccgaggtgatcgcgatgcgggcgctcggcgacccggacgccttc
ctgccgtccgatctggggatccggcgggcggcgcaggggctggggctgccctccaccccc
tcggcgctcaccgcgcgggcggccgcatggcggccctggcgcgcgtacgccgtccagtac
ctgtgggccaccgacgcccaccccatcaaccacctgcccgcctga
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