Simkania negevensis: SNE_A05200
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Entry
SNE_A05200 CDS
T01559
Symbol
pmpB-B
Name
(GenBank) polymorphic outer membrane protein B
Organism
sng
Simkania negevensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
PATR
Amnionless
Motif
Other DBs
NCBI-ProteinID:
CCB88397
UniProt:
F8L6P9
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All DBs
Position
gsn.131:complement(536541..541694)
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AA seq
1717 aa
AA seq
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MRLRKALLLLIIPFNLFAATKTWQGTTSSMNTASNWSPSGVPAANDDLVFPSAATIKTPN
NDIGTLTVGTLTFSGGNYTLSGSPIVCSGAVNITQDSVILSPSSPNQFTGVINVGTITNQ
ATLTAGSAGAIGSTSFQPSVTILGPMGSPSTLALNGNDNTLKTLAGNQYTSVTLGSATLT
VTGGSTNLPLYGPVSGTGNLAVPSGTLALMETNTYSGTTTIETGGSLNVLKGLGSTSQVN
FTSGAGTLVFGDSLTSNKPLQVTGTASISVNDYNVSLTGALTGSGAWTKLGRGTLTVTNS
SLSGPLTLSGGILNGNAASLGAPSSITFNTFGGTLQIAGNMTLSQSITLANPGGFDTNGF
NLELSGPITGANPLTKTGAGTLTLTNVGNNYAAKTIIKQGTLSVTPQTFSSGSTQVVFDS
PGSGILQITDDFSSFTPSVVLFGDGTIDTNTHNMTISGVVAGLSTNAFNKNGTGTLTFTG
QNVYQGPTNVNAGTLQAGIASTSTYGAFGLGSDVTVASGATLDFQTFQNTVGSLDNSGST
LSSATIDATSFTQANSGSLGLNFPTTNSTPVGNISTTGAINLDGTLDVTSTGGFTLTSGE
VILLQSSGAGKQLAGTFSTTNLPFGKLKYDYTQNQVILGVGGCDGTWNTTSSGEWGTVGN
WLSCVPGINNNSQDSATFPELGAGNVTATLSTAGSTQPVTLHEIAFNSSTTNYTIKQFNT
SSVITLDAPVGSSNPTIHVTAGTPTIDAPIVLNTDSMLQLSSGTLTLGSNTTISSSNTAD
LQITEGNMSGTLTNNGSITPHSLTIVGSTLNNNGTVQTTGPIDIEDLQGLVNPININNSS
TFTAGTTLSIGGNATVTNSSTMTSGGNFTINNGSVTNQSGGQLNAGSGSLLSITGGTLIN
DQGGMLGSSNADLLLTGGSLNSSDQVLANNYTQSSSGTLGLNFPTASASPVGNILTMGAI
NLAGTLNVTNTGGFAPPTGTEIVLLKSSGVGQQLSGTFAPTNLPFGVLKYEHNLNRVVLS
VGGCDGTWNTTSSGEWGTAGNWVSCIPGISGNSQDSATFPELGAANVIVTLSTGGSAQPI
TLHHISFNSSTTNYTLKQFDNTSTITLAQPGGSSNPSIHLTAGNATIDAPIVLDDTSVIQ
LSSGTLTLGSNTIITSNNNESLLISQGNTGGTLTNHGSITPASLTIAGNTLMNQSGAQIT
TGSGGVLSITGGSITNSQGATLGSNDADFTFTGGTLNNSDIIKAKIYTQSSPATLQLNLL
TSTDFGKVVASDKATLGGNLIVNASSDPSLATNQTFDLITTANGISNTFSNVSFQGFPAS
VIPDLVYLSNAVQLNTAPAVPGHFSGNHSHISVGILKQHNSYIRRKCFQFRDRLPNGAAP
ANQNAISQIDLLNPEVKGTLASLDDPPSMNSTEQKEINPNLLPLPTGASSSRYGKVYIGP
VASFGEIDSRKDQIGSTYTSVGGLIGADYLFSEIEKFPCNIGLGATLQYRRLWGDGKSNS
GDYQSHILHGSIYTSFIPQALQALSIEAILGYAHIWDHLNRKTGVNNKSTARSDTDQNLF
DALLGLEYTLTLPKQFSFTPYLYLQYIYNHIDGFKESGAGIYNLKVKSQSIDSLNTQLGA
RTCYSLIRKNYTVTFELDAEWIREYLNSDRSVGFTPFVITNQPTNVTAFGPSRNSLLLAV
DLLLRFANGWQTEASYTFQYNSSFYDHFFYLGVGKRF
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgagattaagaaaagctttactcttactaatcattcccttcaatttgttcgctgctact
aaaacttggcaaggaaccaccagttccatgaataccgcgagtaattggagcccttccgga
gtccctgccgcaaatgatgatttagtctttccatcagcagctacaattaaaacgcctaat
aatgatattggcactctgaccgttggcacattgacgttcagtggtggcaactatacgtta
tcaggtagcccaattgtctgctcgggagctgtcaatatcactcaagatagcgtgattctt
agtccctcaagtccaaaccaatttaccggcgtcatcaatgtaggcacgatcacaaatcaa
gcaacgctgactgctgggagtgctggagcaattggaagcacatcttttcagccaagtgtg
acgatactgggccctatgggaagccccagcacattggctttaaatggcaatgataacacc
ttaaaaaccctggctgggaatcaatacacttcagtcactctaggttcggcaacactcacc
gtgacaggaggctctacaaatctccctctttacggacccgtgtctggaactggtaattta
gccgtcccttcgggaacacttgctttaatggaaacaaatacatattcaggaacaacgacc
attgagactggtggatctttaaatgttctaaagggattaggttcaacatcacaagtcaat
ttcacatctggtgcgggaacgcttgtctttggagattcactgacttcaaacaaacccctt
caagtcacgggtactgcttctattagtgtcaatgactacaatgtcagtcttaccggggcg
ttaacaggaagcggagcttggacaaaacttgggaggggaacactaactgtaacgaactct
agtttatcagggcctctcaccctctcaggagggattttaaatggcaacgcagctagttta
ggagctccatcatcgatcacgttcaatacttttgggggcactcttcaaatcgctggcaat
atgacactcagccaatctatcacccttgcaaaccctggtggatttgatactaatggattc
aatctcgaactcagtggtcctatcaccggagcaaacccgcttacaaaaacaggagctggc
acactcaccttgacaaacgtaggaaataactacgctgcaaaaacgatcatcaagcaagga
accctgagtgtgacaccacagacattttcatctggctccacacaagttgtttttgatagc
ccaggaagtggcattcttcaaattacagatgacttctccagttttaccccttcggttgtc
ttgtttggggacggaacgatcgatacaaacacgcataacatgaccatttctggagtggtt
gcaggactttcgacaaatgcttttaacaaaaatggaacgggaacattgactttcactggt
caaaatgtttatcaagggcccacaaatgtcaacgctggaacacttcaagcaggcattgct
tccacttcaacctatggagccttcggactcggttcagatgttaccgttgcctctggagca
actctcgactttcaaaccttccaaaatacagttggaagtttagacaactcgggctcaacc
ctaagcagtgctacaattgatgctaccagtttcacacaagcgaattctggatcgctcgga
ttaaactttccgacgactaattcaacacctgttgggaatatctcaacaacaggtgccatt
aatttagatggcacactagatgtcacaagtacgggtggttttacccttacgagcggcgaa
gtcatcttactacaatcatcaggggcaggaaagcaactcgctggcacattctccacgacc
aatctcccctttggaaaattaaaatatgactatacccaaaaccaagtcattttgggagta
ggtggctgtgatgggacttggaacacaacaagtagtggtgaatggggaacagtaggaaac
tggctctcttgcgtccctggaattaataacaatagccaagattctgccacatttcctgaa
cttggtgcaggaaatgtcactgccactctttcaactgcagggtctactcaacctgtcacc
cttcacgaaatcgcatttaattcctctaccactaactatacaatcaaacagtttaacaca
agtagcgtgattaccttagacgccccagttgggagttccaatcctactattcatgtcacc
gcaggaactccgacaattgatgctcccattgtcctcaatactgactcaatgcttcagtta
agttctggaacgctaactctaggttcaaacacgacgatctcatcttctaacaccgcagat
ttacaaatcaccgaagggaacatgagcggaacattaacaaataacggctcgatcactcct
cacagtctgacaatcgtaggaagtactcttaataacaatgggaccgttcaaaccacgggc
cccattgacatcgaagatctccaaggacttgtcaatcccataaacatcaacaattcttca
acatttactgctggcacaactttaagcatcggaggaaacgcgaccgttacaaatagctct
accatgacttctggggggaatttcacaattaacaacggctcagtcacgaatcaatctggt
ggtcagttaaacgctggctcaggtagccttctctctattacgggaggcactcttataaat
gatcaaggtggaatgttaggatcttcaaatgcagatctattattaacgggtggttcactc
aattcttctgaccaggtcttggcaaataactacactcagagtagttctggaacgttagga
ctcaactttccgactgcttcagcatctcccgttggaaacattttaactatgggtgcaata
aatttagcaggcaccctaaacgtgacaaatacgggtgggtttgctcctcctactggaact
gaaatcgttttattaaaatcatcgggcgtagggcagcaactctctggcactttcgcccct
actaatctcccttttggtgtattaaaatatgaacacaacctaaaccgagtcgttttgagt
gtgggtggttgcgatggcacttggaatacaacaagtagtggtgagtggggaacggccggg
aactgggtctcttgcatcccaggaattagtggcaactctcaagattctgccacatttcct
gagcttggcgctgcaaatgtgattgtcactctttcaactggtggctccgctcagcccatt
acacttcaccacatctcatttaactcgtctacgaccaactataccctcaagcagtttgac
aacaccagtacgatcactttagcccagcccgggggaagttccaatccttctattcacctc
acagctggaaatgcgacaattgacgctcccattgttctcgatgacacctcggtgattcaa
ttaagttccggaacgttaactcttggttccaacaccatcatcacatctaataacaatgaa
agtttactcatcagtcagggaaacacaggtggtacattaacaaaccatggctcaatcact
cccgccagcctgaccatcgcaggcaataccctcatgaaccaatcgggtgctcagataact
actggctcaggtggagttctctcgatcactggtgggagtattacaaacagtcaaggggcg
acattgggaagcaatgatgcagattttacatttactggtggaactctgaataattctgac
attatcaaagcaaaaatctatacccaaagtagcccagccactcttcagttgaatctcttg
acaagtacagattttggaaaagttgttgcaagtgataaagcaaccctcggtggaaatctc
atcgtcaatgcctcttcagatccttccttagcaacaaaccaaactttcgatctaattaca
acggcaaatggcatttcaaacaccttttctaacgtctcattccaaggatttcccgcctca
gttattcccgatctcgtctacctatctaatgctgttcaattaaacaccgctcccgcagtt
ccaggacattttagtggaaatcattctcatatttccgtgggaatcctcaaacaacacaac
tcatatattagaagaaaatgctttcaatttagagaccgacttcccaatggtgctgcccca
gcaaatcaaaacgccatctcacaaattgacctcttaaacccagaagtcaaaggaactctc
gcatctctcgatgatccgccaagcatgaactctaccgaacaaaaagagatcaaccccaac
ttactgccactcccgacaggagcgagctcctcaagatacggaaaagtctacattggtcca
gttgcctcctttggagaaatcgattcaagaaaagatcaaatcggctcaacctacacctct
gttggaggattaattggcgcagattatctttttagcgagattgaaaaattcccctgtaat
attggactgggtgctacccttcagtaccgtagactttggggagacggaaaaagcaactct
ggagattatcaaagccatattctccatggaagtatttatacctcctttattccccaagca
ctccaagcactttctatcgaagccattcttggatacgctcatatttgggaccacttaaat
cgaaaaactggtgttaataacaagagcacagcaagaagtgatacagatcaaaacctcttt
gatgccctgcttggtttggagtataccctcaccttacccaaacagttttcattcacaccc
tatctgtacttgcagtacatctacaatcacattgatggtttcaaagaaagtggagccggt
atttacaacttaaaagtgaaatctcaatctattgactctttgaacacacaattaggagct
agaacctgttacagcctaataagaaaaaactacacggtgacattcgaactcgatgcggaa
tggatcagagagtacttaaatagtgatcgatcggtcggatttacaccttttgtcatcaca
aaccaacccacaaatgtcacagcttttggaccgtctagaaatagcctcttgcttgcagtc
gatctgctattacgctttgctaacggatggcaaactgaagccagctacactttccaatac
aacagctcattttatgaccatttcttttacctaggggtgggaaagcgattctag
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