Simkania negevensis: SNE_A12060
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Entry
SNE_A12060 CDS
T01559
Symbol
rtcB
Name
(GenBank) protein rtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sng
Simkania negevensis
Brite
KEGG Orthology (KO) [BR:
sng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sng03016
]
SNE_A12060 (rtcB)
Enzymes [BR:
sng01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SNE_A12060 (rtcB)
Transfer RNA biogenesis [BR:
sng03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SNE_A12060 (rtcB)
Prokaryotic type
tRNA splicing ligases
SNE_A12060 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PWI_CCDC43
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CCB89083
UniProt:
F8L8G0
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All DBs
Position
gsn.131:complement(1249483..1250703)
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AA seq
406 aa
AA seq
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MVGYNHYETEGKPLKLWDTSEPFEEEAMQQLRNVAKLPFIFRHVAGMPDVHYGKGATVGS
VIATKKAIVPAAVGVDLGCGMMAVQTSLRAEQLPDHLHAIRVAIEKAVPHGRTDNGGRND
RGAWGSLPNHLSSTWKKMEDRYKKIIEKHPKAKSEKHAHHLGTLGTGNHFIEMCLDEQNH
VWFMLHSGSRGPGNRIGSYFIEKAKREMERFYINEYLPDQDLAYLVEDTELFDDYVEAVL
WAQDYASENRQEMMAATLKAVKKHLAPFEVTEMVVNCHHNYVTKENHFGENVWVTRKGAV
RARTGDLGIIPGSMGTGSFIVEGLGNEESFCSCSHGAGRKMSRAKAKKTISLSDHKAAMK
GIEARLDSEILDESPAAYKNISKVMKAQEDLVKIKYRLRQIVNVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggtcggttataatcactatgaaactgaagggaaaccacttaaactgtgggatacatca
gaaccgtttgaagaggaggcaatgcaacaattgcgcaatgtggcaaaactccctttcatt
ttccgccatgtcgcaggaatgcctgacgttcactatggcaagggggcgactgttggatct
gtcattgcaacaaaaaaagctatagttcctgctgcagttggagtggatttaggatgtggg
atgatggcagttcagacctccttgagagcggagcaattgcctgatcatttgcatgccatt
cgagtagccatcgaaaaagctgttccccacggaaggacagataacggcggtcgaaatgac
cgaggagcttggggctctcttccaaatcatttgtcatctacctggaaaaaaatggaagac
cgttacaaaaaaatcatcgaaaaacatcctaaggcaaaaagcgagaaacatgctcatcat
ttgggaacgcttggaacaggaaaccatttcattgaaatgtgcttggatgagcaaaatcat
gtttggttcatgctccactcaggttctcgaggtccagggaatcgtattggaagctatttc
attgaaaaggctaaaagagagatggaacgtttttatatcaatgagtacctccccgatcaa
gatttggcttatttggtcgaagatacggaactattcgatgattatgtcgaggcggttttg
tgggctcaagattatgcttctgaaaaccgtcaggaaatgatggctgcgacattgaaagca
gtgaagaaacacttagcaccttttgaagtcaccgaaatggtggtaaattgccatcataac
tatgtcacaaaagagaatcattttggtgaaaatgtttgggtgacacgcaaaggggctgtt
cgggctcgaacgggtgatttgggaatcattcctggctcaatgggaacaggctcttttatt
gttgaagggctggggaacgaagagagtttttgctcatgctcccacggtgcaggacggaaa
atgtcgcgtgccaaggcaaagaagacgatttctctttctgatcacaaagccgcgatgaaa
gggattgaagctcgattagactctgagattttagatgaaagcccagcggcttataaaaac
atctcaaaggtcatgaaagcacaagaggacctcgtaaaaatcaagtaccgtctgcgacaa
attgtaaatgttaaaggctga
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