Simkania negevensis: SNE_A14080
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Entry
SNE_A14080 CDS
T01559
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
sng
Simkania negevensis
Pathway
sng03030
DNA replication
sng03430
Mismatch repair
sng03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SNE_A14080 (holB)
03430 Mismatch repair
SNE_A14080 (holB)
03440 Homologous recombination
SNE_A14080 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sng03032
]
SNE_A14080 (holB)
03400 DNA repair and recombination proteins [BR:
sng03400
]
SNE_A14080 (holB)
Enzymes [BR:
sng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SNE_A14080 (holB)
DNA replication proteins [BR:
sng03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SNE_A14080 (holB)
DNA repair and recombination proteins [BR:
sng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SNE_A14080 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
NACHT
AAA_14
AAA_16
nSTAND3
AAA_5
AAA_22
TsaE
Motif
Other DBs
NCBI-ProteinID:
CCB89285
UniProt:
F8L8Y3
LinkDB
All DBs
Position
gsn.131:complement(1452515..1453462)
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AA seq
315 aa
AA seq
DB search
MFQLDVLPGHPQIKACLRKLMSAPPSTVLFEGPKGVGKAAFAKAFAHALLSDANPHKLDS
GNHPDLRELYPEGKALMHPMQAMKTLIDETGLPPFESKRKVFIIYEADRMLPSSSNALLK
TLEEPLSYAHFILVSSHPEQLLPTIVSRSLQITFFPLKADEISAYLEGTFKKSPADAKQI
AWLSHGNLSKAEKLAKEKDDQLLSVVAEMGTAALHQSYPHLFRSIAKLESLLEKSQTDAI
EEVLAAVYYWYRDLHLLKAGGDRSLLFFQAHEEELKKNLNCPLPELPELQQKVKRIREAL
VCHITLRHCLTYLLL
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagttagacgtccttccaggtcaccctcaaattaaagcctgtcttagaaagctg
atgtcggcacctccatcgactgttttgtttgagggacccaagggagtgggaaaagctgca
tttgccaaagcctttgcccacgcacttctatctgatgcaaatcctcataagcttgattcg
ggaaatcaccccgatctccgcgaactgtaccctgaaggaaaggctctcatgcatccgatg
caagcgatgaaaacactgattgatgaaacggggcttcccccttttgagtcgaaacgcaaa
gtctttatcatttatgaagcagatcggatgcttccttcgtcaagtaatgcgcttcttaaa
actctagaagaacctctttcttatgcccattttatcctcgtttcttctcatccagagcaa
cttctgccaaccattgtgtcgcgctccttacaaatcacgtttttccctctgaaagcagat
gagatatctgcttacttggaagggacatttaagaagtctcctgcagatgcaaaacaaatt
gcgtggctttctcatggaaatctcagtaaagctgaaaagctagcgaaagaaaaagacgat
cagcttctatctgttgtcgctgaaatggggactgcagccttgcatcaaagttacccccac
ctttttcgttctattgcgaagcttgaaagtttacttgaaaaaagtcaaacagatgcgatt
gaagaggttctagcagcagtttactattggtatagagacttgcatcttttaaaggcagga
ggagatcgctcacttttattttttcaagcgcatgaagaagagctcaagaaaaacctcaat
tgccctttgcctgaactaccagagcttcaacaaaaagtgaagcggattagagaagcctta
gtttgccacattactttacggcactgtctgacatatctattgctttaa
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