Simkania negevensis: SNE_A22590
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Entry
SNE_A22590 CDS
T01559
Symbol
groEL-C
Name
(GenBank) heat shock protein 60
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sng
Simkania negevensis
Pathway
sng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SNE_A22590 (groEL-C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sng03019
]
SNE_A22590 (groEL-C)
03110 Chaperones and folding catalysts [BR:
sng03110
]
SNE_A22590 (groEL-C)
03029 Mitochondrial biogenesis [BR:
sng03029
]
SNE_A22590 (groEL-C)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sng04147
]
SNE_A22590 (groEL-C)
Enzymes [BR:
sng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SNE_A22590 (groEL-C)
Messenger RNA biogenesis [BR:
sng03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SNE_A22590 (groEL-C)
Chaperones and folding catalysts [BR:
sng03110
]
Heat shock proteins
HSP60 / Chaperonin
SNE_A22590 (groEL-C)
Mitochondrial biogenesis [BR:
sng03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SNE_A22590 (groEL-C)
Exosome [BR:
sng04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SNE_A22590 (groEL-C)
Exosomal proteins of other body fluids (saliva and urine)
SNE_A22590 (groEL-C)
Exosomal proteins of breast cancer cells
SNE_A22590 (groEL-C)
Exosomal proteins of colorectal cancer cells
SNE_A22590 (groEL-C)
Exosomal proteins of bladder cancer cells
SNE_A22590 (groEL-C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
KIX_2
MFS18
Motif
Other DBs
NCBI-ProteinID:
CCB90136
UniProt:
F8L490
LinkDB
All DBs
Position
gsn.131:complement(2342637..2344307)
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AA seq
556 aa
AA seq
DB search
MAKMLQFNETALKSILKGVKTLAKAVIVTLGPKGRNVVINKGMGIPLSTKDGVTVAKEIA
LKDKFENIGAQLVKEASSKTSDVAGDGTTTAIVLAEAIFKEGVKNVIAGGNPMSIKRGID
KAVQSIIEALDKLATPVSKPEEINQVATISANNDPDVGTIIAEAMEKVGKDGTITIAEAK
GIETVLDVVEGMQFEKGYLSPYFVTNPEKMTTELSNAYVLLTDRKISNAKDIVPILEKVM
EGGQRPLLIIAEDVEGEALATLVVNKLKAGLPVCAVKAPAFGDRRKAILQDIAALTGATV
VSDEVGLDIQEVGAEVLGFVKTVKVGKEETTLIDGQGAEEVVQKRVAEIRYELENTTSEY
DRGNLEDRLAKLAGGVAVIHVGAATEAEMKEKKARVEDALHATRAAVIDGIVPGGGVALL
RAISALDHLDLKGDEKTGVEIIRKAAYAPAIAIATNCGKEGNMIAEKILEGKGAFGYNGL
TDTFEDLLKAGVIDPVLVTKSALKHASSIASLLITVACMITDKPQPKSDAASGGMGGMGG
MPGMGGMGGMPGMGMM
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaatgttacaatttaatgaaacagcactcaagtcgatcctaaaaggggtgaag
acacttgcaaaagctgtcatcgtcacattaggtccgaaaggccgcaatgttgtcattaat
aaaggaatgggaattcctctttcaacaaaagatggtgtgactgtcgcaaaagagatcgcg
ctgaaagacaagtttgaaaatatcggtgcacaactcgtgaaagaggcatcttctaaaaca
tctgatgttgccggtgatggaacgacaacagcaattgttttggctgaagccattttcaaa
gaaggtgtcaaaaacgtgattgctggtggcaatccgatgagtattaagcggggcatcgat
aaagcagttcaaagcatcatcgaagcacttgataaacttgcaacaccagtgagtaaacca
gaagaaatcaatcaagtggcaaccatctcagccaacaatgatccagatgttggaacaatc
attgctgaagcgatggaaaaagtgggtaaagatggaacgatcacaattgccgaagcaaag
ggaattgaaacagttctcgatgttgtcgaaggaatgcagtttgaaaaagggtatctatca
ccatacttcgtaacgaatccagaaaagatgacaacagagctttcaaatgcttatgttctt
ttgacagacagaaagatttcaaatgccaaagacatcgttccaattcttgaaaaagtgatg
gaagggggacaacgtccacttcttatcattgctgaagatgtcgaaggcgaagccttagca
acgcttgttgtaaacaagctgaaagcaggtcttcctgtttgcgctgtgaaagcgccagca
tttggagacaggcgcaaagctatcctccaagatattgcagcccttacaggtgctacagtt
gtttcggatgaagtgggtctcgatatccaagaagtcggtgcagaagttctcggatttgtc
aaaactgtaaaagtgggtaaagaagaaaccactctaatcgatggacaaggtgctgaggaa
gtggttcaaaaacgtgttgcagaaattcgttacgaacttgaaaacaccacctcagaatac
gaccggggcaacttagaagatcgcttagcaaaacttgctggtggtgttgctgtgattcac
gttggtgcagcaactgaagccgaaatgaaagagaaaaaagcccgtgtcgaagatgccttg
catgcgacgcgagctgctgttatcgatggaatcgttcctggaggcggtgtagcccttctc
cgagcgattagcgcactcgatcatctcgatctaaaaggagatgaaaagactggtgtcgaa
atcatccgtaaggctgcttatgcacctgctattgccattgcaacgaactgtgggaaagaa
ggcaatatgattgctgagaagattctcgaagggaaaggcgcatttggctacaacggtttg
accgacacatttgaagacttactcaaagcaggggtaatcgatcctgtcctcgtgacaaag
agcgcacttaaacacgcctcttcgatcgcaagcctactcattacagtcgcatgtatgatt
accgacaagcctcaaccaaaatccgatgcagcttctggcggcatgggtggtatgggcggc
atgcccggaatgggtggcatgggcggtatgccaggcatggggatgatgtaa
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