Salvelinus namaycush (lake trout): 120017346
Help
Entry
120017346 CDS
T07522
Name
(RefSeq) leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1
KO
K24491
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
snh04990
]
120017346
Domain-containing proteins not elsewhere classified [BR:
snh04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
120017346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
LRR_1
ig
fn3
Ig_2
LRR_LRWD1
LRR_5
C2-set_3
Motif
Other DBs
NCBI-GeneID:
120017346
NCBI-ProteinID:
XP_038816025
LinkDB
All DBs
Position
Sna22:complement(3024510..3033579)
Genome browser
AA seq
648 aa
AA seq
DB search
MFLVFFLGLYLATGVFPSSVSACPSQCSCFFHNLSDGSKARSVICNDPEISLVPASFPVD
TSKLRIEKTAIQRIPSEAFNYLPNLEFLWMSFNVLSALNPDSFRGLLDLEELRLDGNALT
AFPWESLMDMSSLRLLDLHNNRLTSVPADATMYIKNLTYLDLSSNNLLTVPAEVLATWLT
VKSAHGPDSSKMILGLHDNSWVCDCRLYDLIQFQKSPTLSVALIDTRLRCSAPESLSGVL
FSDAELRRCQAPRIHTAVARVRSALGNNVLLRCGTIGIPSPDLAWQRADGKALNGTVQQE
NSKEGIVWSILSVPAVSYRDSGKYVCKANNYAGNAEAVISLVISEAPPKPDNNNNLTSVV
AAAVKKNKVKKPNGVGKAAYQEKLVARVGVPTTSPPPPLVVLDSSPTTEGVGSVADRATP
GPTTLPSPDGLLELEKTNLSNLAQAQYDPDRIVRSVKVLGDTENTITLNWRAPKAKNTTA
FSVLYAVFGERDMRKINVAAGQNRVFIEGLVPKTKYIACVCVRGLIPKKEQCVIFSTDEA
ASAAGTQKLINVIVITVACVIAVPLTVIVCCGALKRRIQKMWGKKSKDIQDSYVTFETLS
PGTKAKGLDGEYLTRLNPEESNRLLSARSSLDSEATAKIEGQPNEYFC
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcgtgttcttcctgggactctacctggcaacaggtgtgtttccctcctcggtg
agtgcgtgcccgtcgcagtgcagctgtttttttcataacctaagtgatggatctaaggcc
aggagtgtcatttgcaacgaccccgagatctcccttgtgcctgccagtttccccgtggac
acgtccaagctgcgtattgagaaaacagccatccaacggatcccaagtgaagccttcaac
tacctccccaatctggagttcctttggatgtcctttaacgtgctgtccgctctcaacccg
gacagtttccgtgggctgctagatctggaggagctgcgactggatgggaatgccctcacc
gcgttcccctgggagtctcttatggatatgtccagcctcaggctgctggacttgcacaac
aaccggttgacctccgttcccgcagatgccacaatgtatataaaaaacctgacctacctg
gatctgtccagcaacaaccttctgactgtcccggccgaggtgctagccacctggctaaca
gttaaatctgcacatggcccagatagctccaaaatgatacttggtctccatgacaactcc
tgggtgtgtgactgccgcctgtacgacctgatccagttccagaagtcgccaacgctctcc
gtggcattaatcgacacgcgcctccgctgctccgcccccgagagcctgtcaggtgttctg
ttcagcgacgccgagttgcggaggtgccaggcgccacgcattcacacagcagtggcgcga
gtccgcagcgccttgggaaacaatgtgctgctgcgctgcgggaccatcggcattcccagt
ccggatctggcctggcagagggcggatgggaaagcccttaatgggacagtccagcaggag
aactccaaggaaggcatcgtctggtcaatcctcagtgtcccggccgtgtcctaccgcgac
tcagggaagtatgtctgcaaggccaataactacgcaggcaacgccgaggccgtcatctcc
ctagttatctccgaagcacccccaaagcccgacaacaacaacaacctaaccagcgtggtt
gctgctgccgtaaaaaaaaacaaagtcaagaaacccaatggggtagggaaagcagcatac
caggagaaactggtggctagggtaggggttcccaccaccagccctccacccccacttgtt
gtgttggactccagccctacgactgagggtgtggggagtgtggcagatagagccacccct
ggaccaaccactttgcctagtccagacggactcctggagctggagaaaaccaacctgagc
aacctggcccaggcccagtatgacccggaccggatagttcgctctgtcaaggtgttgggc
gacacagagaacacaatcaccctgaactggcgggcgcccaaggccaagaacaccacagcc
ttcagcgtgctctacgctgtcttcggcgagcgggacatgcgcaagatcaatgtggcggcg
ggccagaatcgcgtcttcatcgagggcctggtgcccaagaccaagtacattgcttgcgtt
tgcgtccggggcctgatccccaagaaggagcagtgcgtcatcttctcaaccgatgaggcg
gccagcgcagccggcacccagaagctcatcaacgtcatcgtgatcacggtggcgtgcgtc
atcgccgtgccgctcaccgtcatcgtgtgctgtggcgcactcaagaggcgcatccagaag
atgtggggcaagaagtccaaggacatccaggattcgtacgtgacttttgagacgctgtcc
cccgggaccaaggctaaagggttggatggtgagtacctgaccagactcaaccctgaggag
tccaaccgactgctgtcggcccgctccagtctggattcagaggccacggctaagatagag
ggacagcccaacgagtacttctgctga
DBGET
integrated database retrieval system
