Salvelinus namaycush (lake trout): 120017440
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Entry
120017440 CDS
T07522
Name
(RefSeq) VPS10 domain-containing receptor SorCS3-like
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120017440
Membrane trafficking [BR:
snh04131
]
Endocytosis
Others
Others
120017440
Endosome - Lysosome transport
120017440
Endosome - Golgi transport
120017440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
Motif
Other DBs
NCBI-GeneID:
120017440
NCBI-ProteinID:
XP_038816114
UniProt:
A0A8U0TGN9
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Position
Sna22:21360733..21425662
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AA seq
1150 aa
AA seq
DB search
MEPIDGKAVVPKGEEKLPKDLDGVIGKVPPDAVSTVRDKKAPNRSKHFTADSKKSDSSFE
VKDATLASSNRTRTKRSTSFGEYSDRSQIGGPGDAFSAEKLVEPLQGVYSPRTEYRRTGE
DARTSPRQSEPLLVTSTFPLSGDSAHNQAMGHWVGENSSVILTLTKQYDFNLGAFTESSL
WRSVDYGSTYIKLNKKVGSTLACLYVCPTNKRKIMMLSDPELEQSVLISSDEGASFEKYP
INFYMDGLLFHPTQENWLLASSPDNKVYSTMDFGRKWQLVSENVTPGRFFWAQTGLDREA
DVVHMETHIAKGRAQYVKCRAQRCTESNRQYLFPGYIDKNSLVVQDNYVFVQVTKSGQAS
YFVSYMRESFKRIQLPKYCLPKDMHIISTNEKQVFSAVQEWNQNDTYSLYISDSPGVYFT
LSLENLRTRREPGGNLLVDLYKVEGINGIFLANKLVGHEVKTSITYNKGQTWALLQAPNT
DVAGNSLHCILPFCSLHLHLDTPVNPYLPGRIFSMDSAPGIIVATGNIGTELSSTNLGMF
ITSDAGNSWRQIFEEELGVWFLDNGGALVAVSLVATVPIRHVWVSLDEGKKWDRHSFSLA
PLFLDGVLMQPENHIITFTGHLSRVSEWQLIKIDYKAIFSRRCMDGDYQTWHLHNKGEPC
VMGEKQTFMKRRPGNRCMLAQDYSRVISSEPCICRTYDFECDYGYERQADGKCTPAFWFN
PSTVPRSCSTSHNYLNSTGYRKVLSNNCKEGGKDVYSPRKQHCSPRPPRGLRLTTSQGEL
TATVGSNVTFLVYLDDGNSLWTYIQLDFGDGITFMYNLSRRGDGIKHSYREDGIFRVTAH
AENSQGYDISSMFLHITSPVERVYLSAPIVAIRKKEANLTAVVWPVHHRTLTFFWWFENS
SEPLITLDGSISYTFWKEGMNRIMVQVSSGCNILQDTKVIIVKDFFKSLLLSFSPALDEH
NPDIPEWREDVGRVVRTAVSQVSGFPEERLLVSLFPGVPTTAELFILPETQLPEPGKRNK
EDLVSISNLVINALNQGLVQFELKADTQIIVYITQLTLAPLVYSNPIHSSSVMLMLLSVA
FVGLAAFFIFKLKRKIPWIHVQAEENQEKEPEMIGTVGQNNTMSKMKLSEFPTEKELMEK
ELKIRSRAYI
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaattgatggaaaggccgtagttccaaaaggtgaggagaaattgccaaaggac
ttggacggagttattgggaaagtgccaccagacgctgtatctactgtcagagataaaaag
gcgccaaaccgttccaagcattttactgctgacagcaaaaagtctgacagttcctttgaa
gttaaagacgctacacttgcttcaagtaaccgtacgaggacaaagcgaagcacatcattt
ggcgaatattcggacaggagtcaaattggaggtcctggtgacgcattttcagccgagaag
cttgtggagcctttacaaggcgtttacagtccgaggacagaataccgacgaactggggag
gacgcaagaactagcccgaggcaaagtgagccgcttctggttacctccactttccctctg
tccggagactctgcgcacaaccaggcaatggggcactgggttggagaaaacagcagcgtg
atcctgaccttgacgaagcagtatgactttaacttgggtgctttcactgagagttctctg
tggagatcagtggactatgggagcacttatattaaactgaataaaaaggttgggtcaacc
ttggcttgcctatacgtctgcccaaccaacaagagaaagataatgatgcttagcgaccca
gagctggagcaaagtgtactcatcagctcggatgaaggtgccagcttcgagaagtatccc
attaacttctacatggacggtctgctgtttcatccaactcaggaaaactggctgctggct
agcagtcctgacaacaaggtgtacagcacaatggattttggaagaaaatggcagttggtt
agtgagaatgtaactcctggccggttcttctgggcacaaactgggctagacagagaggca
gatgtggtccacatggagacccacattgccaaaggacgtgctcagtatgttaagtgcaga
gctcaacgatgcacagaatcaaacagacaatacctgttcccgggatacatagacaaaaat
tctctggttgttcaggacaactatgtgtttgttcaggttaccaagtcagggcaggcgagt
tactttgtgtcctatatgagggaatcatttaaacgaattcagctacccaaatactgtctt
cctaaggacatgcacatcatcagtacaaatgagaagcaggtgttttctgctgtacaggag
tggaaccagaatgacacctacagcctgtatatctcagactctccaggggtctacttcact
ctgtctctagagaacctccggaccagaagagagccaggcggaaatttactggtcgacctg
tataaggtagaaggaataaatggcatatttctagccaacaaattggtgggccatgaagtg
aagacatccatcacctataacaagggtcagacctgggccctgctgcaagcccccaacact
gatgtggctggaaacagtctccactgcatcctgccattttgttctctgcatctgcacctg
gatacgccagtgaacccttacctgcctggacgcatcttcagcatggactcagcacctggg
atcattgtagctacaggcaacattggtacagagctgtcctccactaaccttggaatgttt
ataacatctgatgctggaaatagctggagacagatttttgaagaagaactcggtgtttgg
tttcttgacaatggaggtgctttagttgcagtttctttagttgcaacagtacccatccgg
cacgtatgggtaagtctggacgagggtaagaaatgggatcgccacagtttctctctggct
cctttgtttctggatggagttctcatgcagccagagaatcacatcatcactttcactgga
cacttaagccgtgtttcagaatggcagctgataaagattgactacaaagccatctttagc
aggagatgcatggatggagattatcagacttggcacctacataacaagggagagccctgt
gtgatgggagagaagcagacctttatgaaacggaggccgggtaaccgctgtatgctggcc
caggactactcccgagtcatatcctcagaaccatgcatctgcaggacatatgattttgaa
tgtgattatgggtatgaacgtcaagccgatggaaagtgtacccctgctttttggttcaac
ccaagcactgtgccaagaagctgtagcactagccataactacctcaacagcacagggtac
agaaaggttttgtccaataattgcaaagagggagggaaggatgtgtactcccccaggaaa
cagcattgttcccccaggcctcccagaggcctcagactgactaccagccagggagagctc
accgccaccgtgggcagtaatgtcaccttcctggtgtatctggacgatggaaactcattg
tggacttatatccagctagactttggggacggcatcacgttcatgtacaacctgagccgg
agaggcgatggaatcaaacacagctatagagaagatgggatcttcagagtgacagcacat
gcagagaacagccagggttatgacattagctccatgttcctacacatcaccagcccagtg
gagcgtgtgtatctctcagctcctattgttgccatcaggaagaaagaagctaacctaacg
gctgtggtctggcctgtccaccacagaacactcaccttcttctggtggtttgaaaacagc
tccgagcccttaataaccttggatggaagcatctcgtacacgttttggaaggaaggcatg
aacaggatcatggtccaagtgtcttctgggtgcaacatactgcaggataccaaggtcatc
attgtcaaagatttcttcaaatccctgctgttatcgttctctccggctttggacgagcac
aaccctgacatcccggagtggagagaggacgtgggccgcgtggtgaggacagctgtatca
caggtttctggatttccagaggaacggctgttggtatcgttgtttccaggtgttccaaca
acagcagaactatttatcctgcctgagacacagttgcctgaacctgggaagcggaacaaa
gaggacttagtgagtatatcaaaccttgttataaatgccctgaaccaaggattggtccag
tttgagttgaaagctgacactcaaataattgtttacatcacacagctaactttggcacct
ctggtttactccaaccctattcacagtagctcagtcatgctgatgttgctatctgtggca
tttgttggtttagctgcgttcttcatcttcaagttgaaaaggaaaatcccttggatccat
gtccaggctgaggagaaccaggaaaaggagccggagatgattggcacagtcgggcagaac
aataccatgtccaagatgaagctcagtgagttccccacagagaaggaactcatggagaaa
gaactgaagatcaggagcagagcttatatttag
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