Salvelinus namaycush (lake trout): 120017534
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Entry
120017534 CDS
T07522
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120017534 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120017534 (polr1b)
Enzymes [BR:
snh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120017534 (polr1b)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120017534 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
120017534
NCBI-ProteinID:
XP_038816285
UniProt:
A0A8U0P0Y0
LinkDB
All DBs
Position
Sna22:9580657..9597073
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AA seq
1134 aa
AA seq
DB search
MDFASKWSSLLTSPSLKHLTEAGYGIPKEKQHAAVQDLTKAHIESFDQAVSDGLCRAVQA
IHPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRVVMEEGCITRGKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLKSAVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKERMAAWMVSVKLSMEKRAHRLTGGVSSDNLVKIF
NTGSDVTHPFEYLLATGNLTSKTGLGMIQKTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGRAYADCYPVLLDGAMVGWVETELAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVCNLALGQQELIGSFEQLYINVCISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFGHGCVYKTELVD
LALKIKGEDNLVFGVKPDDPKVMDKLDTDGLPSIGAVLKHGDPFYSYINLNTGQSFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcgagtaagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggctacggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagatggactgtgtcgtgctgtacaggcc
atccatcccttggagtttatgtttaaaaatgacaggatcagcctggcatttgtggaggcc
accatctttaaaccagtggtgggcaaaggaagcatctgccgggacctaagggtgttccca
gcagagtgcagagggagacgctgctcctaccggggaaagcttgtggcagatgtcagctgg
tccgtgaatggggttcccaaaggcatcatcaagcagtcgctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctgcatgggctccctcccaaagagctcattgagcaccat
gaggaggctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtatctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaacgggactgtgatgctcaacttcatatac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggagctgatcaaaggtcgcgaggcgaactccttctacaagagc
tgtgtgtctgagatgctgcgagtcgtcatggaggagggctgcatcacccgcggaaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccat
gaacagtgtgccaactacctgctcgaccagtgcatctgtatccacctgaagtcggctgtg
gagaagttctacctgctgtgtctgatgacgcggaagctattcacgtttgccaagcaggag
tgcatggaggagaacccggacagtctgatgtgtcaggaggtgctcacgccaggacggctc
tacctaatgtttctcaaggagaggatggctgcctggatggtgtctgtgaaactctctatg
gaaaagagggcccataggctgactggtggggtgagctctgataatctggtgaagatcttt
aacacgggctctgatgttacccatccctttgagtatctgctagccactgggaatctcact
tcaaagacgggtctgggcatgatccagaagacgggactgtgtgtggtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggggcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgccccgtg
cacactcccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcagggcctacgctgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgagctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcactaccccctgccgcatggtg
cgacctgtctgcaacctggccctgggccagcaggaactgatcggctcctttgaacagctc
tacatcaacgtgtgcatcagtgaggatgagatcgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaacttcatcccatactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagaccatgggcttccccctc
cactcgttccaggaccgctcggacaacaagctgtaccgccttcagaccccccagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgacatggaggacgccatgatcctgaac
aagtcgtcatgggagaggggctttggtcatggctgtgtttacaagactgagctggtggac
ctggcactgaagataaagggcgaggacaacctggtgtttggggtcaaacccgatgacccc
aaggtaatggacaaactggacactgatggtctgccctccatcggcgcagtgctaaaacat
ggagaccccttctacagctacatcaacctcaacaccgggcagagctttgtcaacttttac
aagagtcaagaaagctgtgtagtagacaacatcaaggtgtgcagcaacgacgttggctcg
ggccgcttcaagcgcgtctgcatcaccatgcgagtgccccgtaaccccaccatcggggac
aagttcgccagccgccacgggcagaagggcatcctgagccgcttgtggcctgccgaggac
atgcccttcacagagagcggcatgacccccgacattctgtttaaccctcacggcttcccc
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggacatgttgcgcgctgccggctacaaccactacggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaggcggacatcttcatcggcgtggtctactaccagagg
ctgcgtcacatggtctccgataagttccaggtgaggaccactggcgcgcgggacaaggtg
accaaccagccggtgggcggaaggaacatccaggggggcatccgcttcggggagatggag
cgcgacgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgaccgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgattccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga
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