Salvelinus namaycush (lake trout): 120017541
Help
Entry
120017541 CDS
T07522
Name
(RefSeq) TATA-binding protein-associated factor 172-like isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120017541
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
120017541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_2
TOR1L1_N
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
120017541
NCBI-ProteinID:
XP_038816303
UniProt:
A0A8U0THY4
LinkDB
All DBs
Position
Sna22:complement(10106658..10176215)
Genome browser
AA seq
1854 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAVQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKLKEESCADFSPEDSSDRLSFYRFDISRLLKHGASLLGSA
GAEFEVQDDKSGEVDPKERLARQRKLLQRKLGLDMGAAIGMDTMELFNDEDLDTQYTCTP
SGPKAQGQGERGSEPCSSNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSRDM
DPNERSNDSFEGEPEEKHRKTSNVVIEQPATEHKVLIDNVPDNSSLLEETQEWPLESFCD
ELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVGSTAEQMARHHQEWLEDVVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMTDSGVTMTVDILLKLLTEDQWEVRHG
GLLGIKYGLAVRQDLISALLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGLVQLLPNK
VPFIVNSLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFLRH
TISSVRRAALETLYTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKVWT
ELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINILLEVKSRCKEKAGGKPRQGALV
QVKETVQEYIAGAETVTEDPVTRDYVVTRARLMAAKLLGALCRCICDPQLNSSSQDIRPA
ESLGQLLLFHLNSKSALQRIVVALVLCEWAAVQKVVSAMVQPRLLAILSEQLYYDEIAIP
FTRMQNECKQLIALLADAQIDVRDRLNCSVFTIDQANELVTTIFAESTVGLDMKSKPFHP
LDSKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKREEN
TLVQGYAASFIAKLLQQCATRQPCPNSKIVKNLCSSICMDPLLTPSSACPVPPTQTAKAG
MSEKECMHHMVNKTKGIITLYRHQRAAFVITSKRGPTPKTSKTPTTELPPGSTITTDTDE
NKKPFLVQRRGAEFSLTTVARHFGQELTRSLPYLWEFVVGPLRAVVENNQGIDAKLQLER
GDAAAQELVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCVGVLS
KIATMETMHLFLERVLPWLGCIEDGTKQEGAIEAMACVMEQLDVDIVPYIVLLVVPVLGR
MSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFMEQLLDSRKLE
NYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYLRAQ
EYAKTKAADCTPLPSLVVCPPTLTGHWVDEVGKFCTDEYLNPLHYTGPPTERARLQHQVK
KHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVILSGT
PIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALHR
QVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVSVEDTISTASIH
EEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQHSPK
LSALKQLLLDCGLGSSGSAEGTEAVVAPHRVLIFCQLKSMLDIVEHDLLKPQLPAVTYLR
LDGSVPTGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQA
MDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVISQENASLQSMGTDQLLN
LFTLDKDGKDDKGESSSSGGKASIKNVLDGLGDLWDQQQYETEYNLDSFMHSLH
NT seq
5565 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgtcaaggcttgatcgtctgttcatcctgcttgacactggaactacaccggtg
acgaggaaggctgctgccgtacagctgggagatgtggtcaagctccacccgcatgagctc
aacaaccttttgtcgaaggtgttgacatacctgagaagtccaaactgggacacacgtatc
gctgcgggtcaggcagtggaggccattgtgaagaatatcccagagtggaacccgtcaccc
aagctcaaagaagagtcgtgtgcagacttctccccagaagactcctctgaccggttgagt
ttctaccgctttgacatttcccgcctgctcaaacatggtgcttctctgctgggttccgcc
ggtgcggagtttgaggtccaggatgacaagtctggtgaggtggaccctaaagagcgtctg
gcccgccagaggaagctgctgcagagaaagctgggactggacatgggtgccgccattggc
atggacacgatggagctgttcaacgacgaggacctggacacccagtacacctgcacgccg
agtggccctaaggcccagggacagggagagaggggctctgaaccctgctccagcaatcac
gtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatgagcaaccga
cagaagaacaaggctaagaggatggccaagctagtggcaaagcaacgatccagagacatg
gatcccaacgagagaagtaatgacagttttgagggggagcctgaggagaagcacaggaaa
actagtaacgtagtcatcgagcaaccggcaacggagcataaagtcttaatcgataacgtt
ccagacaactccagtctcttggaagagacccaggagtggcccctggagagcttctgtgat
gagctctgtaatgacctcttcaacccctcatgggagattcgtcacggagcaggcacaggt
ctcagggagatcctcaagtctcaaggcgctggaggagggaagctggtgggaagcactgca
gaacagatggcgcggcaccaccaggagtggctggaggatgtggtcatccggctgctctgt
gtctttgctctggaccgttttggagattttgtctctgatgaggtggtggctccggttaga
gagacctgtgcccagacactgggcgtggccttgcgccacatgactgacagcggtgttacc
atgacggtagacatcctgctgaagctgctgacggaggaccagtgggaggtccggcatggg
ggtcttctgggcatcaagtatggcctggcagtcagacaggacctgatatccgctctgctt
ccacgggtgctccctgccatcacggaggggctgcaggacctggatgatgatgtcagagcg
gtggcggccgcggccctcatccctgtggtggacgggttagtgcagctactccccaacaag
gtcccattcatagtgaactccctgtgggatgctctcctggagctggatgatctgacagcc
tccaccaacagcatcatgaccctactgtcctctctgctcacctaccctcaagtccgacag
tgcagcatgcagcagtccctaacggtcctcgttcctcgggtctggccattccttagacac
accatatcgtcagttagacgggccgcactagagaccctttacaccctactatccaaagct
gaccagagctgtgcattatggctcaaccaggtcctgcaagacatgctccgacacatcttc
cagtcctgcatcctggagagcaatcaggagatcctggacctcatccaaaaggtgtggaca
gagctgctgcgccaggcccctcagcagtatgtagtagcagccagctgtccctggatgggc
gcctggctctgtctgatgatgcaagcctctcatatccccatagacatcaacatactgctg
gaagtcaagtctcgctgcaaggagaaggctggtgggaagcctcgccagggagccttggtt
caagtgaaggagactgttcaggagtacatcgccggggcagaaaccgtgaccgaggaccca
gtgacgcgggactacgtggtgacacgggctcgactcatggccgctaagctgttgggggcc
ctgtgtcggtgtatttgcgacccgcagctcaattcatcctcccaggacatccggccggct
gagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctgcagcgcatc
gttgtggcactggtcctctgtgagtgggccgccgtgcagaaggtggtgtcagccatggtc
cagcctcgcctgttagccatcctgtcagagcagctgtactacgatgagatcgccattccc
ttcacacgcatgcagaacgagtgtaagcagctcatcgccctgctggccgacgctcagatc
gacgtgcgcgaccgcctcaactgcagcgtgttcactatcgaccaggccaacgaactggtg
accaccatcttcgcagagtccaccgtgggtctggatatgaagtccaaaccgtttcatcca
ctggacagcaagcgccagcaggcccagtccacggtgggcgagaccagtgtggagtggcag
cagctgcacctgcgcgtccacatgttcaccgcctgcgccgtggtcaacctgcaggcgtta
ccagacaagctgaacccagtggtgcgtccgctgatggaggcggctaagcgggaggagaac
accctggttcagggttacgccgcctccttcatcgccaagctgctgcagcagtgtgctact
aggcagccatgtcccaattccaagatcgtcaagaacctgtgttcgtcgatctgcatggac
cccctgctcacgccctcctcggcctgccccgtgccccccactcagactgccaaagctggc
atgtcggagaaagaatgcatgcaccacatggtcaataagaccaagggcatcatcaccctc
taccgccaccagagggcagcatttgtcatcaccagcaagaggggccccacccccaaaacc
tccaagacccccaccactgaactgccacccggcagcaccatcaccacagatactgatgag
aataaaaagccatttctcgttcagagaagaggtgccgagttctctctgacgacggttgcc
aggcactttggccaggagctgacgaggtcactgccctacctgtgggagtttgtggtggga
cctttgagggccgtggtggagaacaaccaaggcatcgatgcaaagctccagttggagagg
ggggatgctgcagcccaggagctggtcaactctctgcaggtgctggaggtcacggctgga
gccatggcccccgagctcaaacctctgttgttggagcacctgccccacctgttcacctgt
ctgcagcacccgtacacggccgtgcgtcacatggcggcgcgctgcgttggtgtgctcagt
aagatcgctaccatggagaccatgcacctgttcctggaacgtgtgctgccctggctgggg
tgcatcgaggatggcactaagcaggagggggccatcgaggccatggcctgtgtgatggag
cagttggatgtggacattgtgccgtacattgtgctgctggtggtgccggtgctgggccgc
atgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttcgccaccctcatc
cgcctgctaccactggaggcgggtatcccggatcctcccaccatgtcggatgatctgatt
cgccagaaggccagagagcgtcacttcatggaacagctgctggacagcaggaagttggag
aactacaagatccctgtgcccatcaaggctgagctccgcaagtatcagcaggacggagtg
aactggctgtccttcctgaataagtacaagctgcatggtatcctgtgtgacgacatgggc
ctgggcaagaccctgcagtccatctgcatcctagcaggggaccactacctcagggcgcag
gagtatgccaagaccaaggcagcagactgcacccccctgccctctctggtggtgtgcccc
cccaccctgacgggtcactgggtggacgaggtgggcaagttctgcaccgacgagtacctg
aaccccctgcactacacaggaccccccaccgagcgagcacggttacagcatcaagtgaaa
aagcacaacctagtagtagcctcctacgatgttgtacgaaacgacattgacttttttagg
aatataaaattcaattactgtatcctcgacgagggccatgtgatcaagaacgggaagacc
aagctctctaaggccattaagcagttggcggccaacttccgagtcatcctatcaggaacg
cccatccagaataatgttctggagctgtggtcgctctttgacttcctcatgcccggcttc
ctgggcacagagcgccagtttgctgcccgctatggcaagcccatcctggccagccgtgac
gccaagagctcgtcacgcgagcaagaggccggggtgctggccatggaggcgctgcatcgc
caggtgctgcccttcctcttgaggagaatgaagaaggacgtgctgcaggacctgcccccc
aagatcatccaggactactactgcaacctcagccctctacaggttcagctgtatgaggac
tttgccaagtcccgggccaaggtcagtgtggaggacaccatctctacagcctccatccac
gaagaggagaagcccaagctgaaggccacgggccacgtgttccaggctctgcagtacttg
cggaagctgtgtaaccacccaggcctggtactgctgccacagcacccggagtacaagcgg
atcacagaccagctggcagcacaacactccagcctccgagacatccagcactcgcccaaa
ctctcagctctcaaacagttgttgttggactgtggtctgggcagcagcggctcagcggag
ggcacagaggcggtggtggccccgcacagagtgctgatcttctgtcagctgaagagcatg
ctggacatcgtggagcacgacctgctcaagccccagctgcccgccgtcacctacctgcga
ctggacggcagcgtcccaactggcctgcgccactccatcgtctccaggttcaacaacgac
ccctccatagacgtgctgctgctcaccacccacgtgggcggtctgggtctgaacctgacc
ggcgctgacacggtggtgtttgtggaacacgactggaacccgatgagagacctacaggcc
atggaccgcgcacacaggataggacagaaacgcgtggtcaacgtgtatcgtctgatcacg
cgtggcaccctggaggagaagatcatgggcctgcagaagttcaagatgagcatcgccaac
actgtcatcagccaggagaacgccagtctgcagagtatgggcaccgaccagctcctcaac
ctcttcaccttggacaaggatgggaaggatgataagggcgagtcgtcgtcctctggaggg
aaagcctccattaagaacgtgctggacggcctgggggacctgtgggaccagcagcagtac
gaaaccgaatacaacctggacagcttcatgcactcgctccactag
DBGET
integrated database retrieval system
