Salvelinus namaycush (lake trout): 120017599
Help
Entry
120017599 CDS
T07522
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
120017599 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120017599 (slx4)
03400 DNA repair and recombination proteins [BR:
snh03400
]
120017599 (slx4)
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
120017599 (slx4)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
120017599 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2
zf-C2H2_4
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
120017599
NCBI-ProteinID:
XP_038816391
UniProt:
A0A8U0TI13
LinkDB
All DBs
Position
Sna2:71417917..71427989
Genome browser
AA seq
1946 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRRKAGVTEKRNVAEPSSQDTAKDIPTKRVTTRRKKKDVGPS
SKGALGNNSEHVSSISTTCDEPNRLPSNTDKSKQAVVNGGIELGVGENGSSGAVDVAGSQ
PEDRGMGVKEKVLHRMQQFKRVSPQKLAHGERNPPAATGSESDSAAPHPLPDNEVPSTSA
STPLPLDPQVDDSDEALALRLQEELDREAQAVAQGSAVDLEQGGLFFCQLCQKDLSAMSP
TGRTQHINRCLDESEDSAAPAPPPAPSVPECPICGKRFKSQKSRAAHLKRCSSTMGVAPV
VLLQAVQRQVAEGLTDSTANQPPQAGGSKRKGSTDPSLPGRKKPRKKPRGLDEDTMVAMA
LSHSLLEQEKEMERDMQRELQREMEREGGQQLPALLPHISLSQLKWRAEPSKGRGKRKKG
APPRPPPLLLVQDSETALRRLQERVAGLLLRTCAPSPPTPTRCPSSLPSCSTGAGPLWQK
SALRDGGPKVISEFYTPELREFIQPWVSLKTDMVCPTKAMPVSSTNLSITEGISMTKQPI
PSSQQPVSSTQAAPSSLPSTPGTGHLPVGSQTLCDLMELADEGMTLTQWGYSTPGPARDK
ENTATDFHLSGCVPESTDKPPDLCLSGFIPESIRNTESHQLRSVPQSRDTNRSNQKSVAL
SRLASDLTSMVNNPQFSDVQLQVDSGEVYFTHSFMLYARCPLLAQMVHDSGFGVQEDCMP
SAQRVLLGEVPGQAVYTLLQYLYTAHCPLTRTLLPHVQELAARFNLEELQQLCQLYPAQT
DIHRGVEGQGDQWGDYPAQEHQSGGEEEHQDQVFMELLHSMWNEEEVEEDEDRGEEGGIA
MEEEGRGDGVMIEDGETNEERVNEEEMEEIYEFAATQRKRDEGKESEKEESEEEEEGGVT
FFTETEEEQEAPIQAHSLAEHSDKGELTCMTSPQTKPPSLEADIAIGDIDTDRGNPNRIK
TDLNKSEGRDPECSRTATMESDRTKQFESNVTSSRSVGEVSTTKSLHDDQELNASLDRSY
SRLFSDSWGVYETQEEPHTSPPTQPSCHSQPPRAIQKPFCSQPPRTMVVGQPELTSPPSS
RSQPTRLRVDGGTRQTAIPTLQYSAIEIIDLSISPPLVPGVAALPVPGLSPGEVTDTGAR
VRTEGVVGGGKVPVCKELLQEKVPSSPDDLKRESHGPYSISLPVSPPHSTKEEPELIVLS
DSSEEMEVGDLAPTSPSPPPPPRLSQNHQGYTPITTQSNTESKKSSSKEKETIGGSVRVP
SVSPSDQGLDPDPPSYKPGSNPGSAGSTSLVDCSAEMSWFIPATPPLPSRRTSSSSTQTF
SSMRRTQLFPKANSSSSSSAASVFSSPTLPFRPSRQTSNPHRVSTHSAQTESSISRQKSD
SRGLRDDRSSQKYNSGSVGSDRAARSPVPSKSQPKRSCFPRLTPSLSVIPPPDPSTKGTP
LHNIPQPYSSTPLYSDLPKPSAPSLAFPLLRDGEGDNGTRQRGRGLGISGSPWKRGGLAS
LGLREESDEMMKMEELERSVVKEEQEEEMGEDMERSSNSFQRSFLGMDEPPMAFDDSWGL
NAGGGDTDGERSQAVCFSLRLESSVGGASPPRQGRRDGEIAGPSSTFTPSPLPKAYTTHS
YSTPSPPPPNTTTPQANPEINANVLDAEIWDDWGEEEDEALPLSQRVNPVALAQRVAQLK
TPVAPRRKGQQGPLVPITPMPSYSDMDTPDLKNKLNRFGVRPLPKRQMILKLKEIHQYTH
QVVSSESEDEAPSLGRPRAVGPPPTTSSMEPTRKPVSCAQTGGFKEPSGRAAPTISLVKL
SGGEDMEPLSASQGSNTSSTAPSEDSERSNPEQCLSDHSDNEDITASQSASKLQDNLVAV
RRFIQSDPDLYGQILLYQPLVLSDFQDRLKAAGIRLGGAKLLDYLDSQCITFTTAKPGLR
GGRKRKVKGATRAGGRGRRGAAKTAD
NT seq
5841 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgatcaagacttcgtggacctctgctctaagttgctcaaacgagtccgc
agaaaagcaggcgtaaccgagaagagaaatgttgcagagccctcgtcccaggacactgcg
aaagacatacccaccaaaagggtgacgactaggaggaagaagaaagatgttggcccaagt
tcaaagggagctttgggtaacaactctgaacacgtttcctccatctctaccacttgtgat
gaaccaaaccgacttccctccaatacagacaaatctaaacaagcagtggtcaatggaggt
attgaacttggtgttggagagaatgggtcatcaggggctgtggatgttgctgggtctcaa
cctgaggataggggaatgggggtgaaggagaaagtgctacacaggatgcagcagttcaag
agagtcagtccacagaagctggcgcatggtgagagaaatccgcctgcagcaacagggagt
gaaagtgacagtgctgctccccatccactgccagataatgaagttccatccacctccgcg
tccactcccctaccactggacccccaggtggatgactcggatgaggccctggccctgcgt
ctacaggaggagctggacagggaggcccaggctgtggcccagggtagtgcagtggacctg
gagcagggaggcctgttcttctgtcagctctgccagaaagacctgtctgccatgagcccc
acaggacgcacccaacacatcaacaggtgtctagacgagagtgaggacagtgctgccccc
gcccctcctcccgctcccagcgtcccagaatgccccatctgtggtaaacggttcaagtcc
cagaagagtcgcgcggcccacctgaagcgttgctcctccacgatgggcgtggctcctgtc
gtgctgctgcaggctgtacagagacaagttgctgagggcctgactgacagcaccgccaac
caacctccgcaggccggaggttccaagcgtaaaggctccacagaccccagcctcccgggc
aggaagaagcccagaaagaagccccgtggcctggacgaagacaccatggtggccatggcc
ctgtcccactccctcctggagcaggagaaagagatggagcgggacatgcagagagagtta
cagagggagatggagagagaaggtggtcagcagctcccagccctcctccctcacatttct
ctgtcacaattgaagtggagagctgaaccaagtaaggggcgtggcaagaggaaaaagggt
gcaccccctcgcccccctcccctcctcctggtccaggactcggagacagccctgaggcga
ctacaggagcgcgtggctggcctcctcctccgtacctgcgccccctcgccgcccaccccc
acacgctgccccagctccctgccctcctgcagcactggtgctggccccctctggcagaag
agtgcgttgcgggatggagggccgaaggtcatctctgagttctacaccccagagctcaga
gagtttatacagccttgggtgtctctaaagacggatatggtctgtcctaccaaggccatg
cctgtatcctccaccaacctttccataacagaaggcatctctatgaccaagcaacctatc
ccctcctcccaacaaccagtctcctccacccaggcagccccctcttcgctcccttccacc
ccagggacagggcaccttccagtgggcagccagactctgtgtgacctgatggagctggct
gatgagggaatgaccctcacacagtggggctattctaccccaggacctgccagagacaaa
gagaacactgctacagacttccacctaagtggctgtgttcctgagagcacagacaaaccc
cctgacctgtgtctcagtggcttcatcccagagagcattagaaacactgaaagccatcaa
ctgagatctgttcctcaaagcagagataccaacaggagcaaccagaaatcagtggcgctg
tccaggctggcctcagacctgaccagtatggtgaacaacccccagttcagtgatgtccag
ctacaggtggacagtggggaggtgtacttcacccattcattcatgctgtatgctcgatgc
cccctgctggcgcagatggtccatgacagtggattcggggtgcaggaggactgcatgccc
tcagcccagagggtgttgttgggtgaggtaccaggccaggcagtgtataccctgctccag
tacctctacacagcccactgtcccctcacacgcaccctgctgccacacgttcaggagcta
gcagccaggttcaacctggaggagctgcagcagctgtgccagctctacccagctcagaca
gacatccacagaggtgtagagggacagggggatcagtggggagactacccagcccaggag
caccaatctgggggagaggaggagcaccaagaccaggtcttcatggagctcctccactcc
atgtggaatgaagaagaggttgaggaagatgaggacagaggagaggaaggagggattgca
atggaggaagaggggcgaggggatggcgtgatgatagaagacggagagacaaacgaagaa
agggtgaacgaagaagagatggaggagatatatgagtttgctgccactcagagaaagagg
gatgaagggaaagagagcgaaaaggaagaatcagaagaagaggaggagggaggagtgaca
tttttcacagagacagaagaagagcaggaggctccaatccaagctcactcattggctgaa
cactcagataagggtgaattaacatgcatgacatcccctcaaacaaaacctcccagttta
gaggcagacatagctattggtgacattgacacagaccgggggaatccaaataggataaaa
actgatctcaacaaatcagaaggtagagatccagaatgttctagaacagccaccatggag
tcagacagaactaaacaatttgaatcaaacgtcacaagctcaagaagtgttggagaggta
tcaacgacaaaaagcctccatgacgatcaagaactaaatgctagtctggaccgtagctac
agccgcctcttctctgactcttggggggtctatgagacgcaggaggagccccacacctcc
ccaccaacacaaccatcctgccactcccaaccccccagggctatccagaaacccttctgc
tcccagccccccaggaccatggtagtgggacagccggaactcacctccccaccatcctcc
cgctcccagcccacaaggctgagggtcgatgggggtacgagacagacagcgatccctacc
ctccagtactcagccattgaaatcattgacctctccatcagtcctcctctggtccctggt
gtagccgcactacctgttcctggtttgtccccaggggaagtgactgacaccggggcacga
gttaggacggagggagtggtgggaggagggaaagttcctgtgtgtaaggagttactccaa
gagaaggtaccgtctagtccagatgacttaaagagagagagtcatggtccgtatagtatt
tctctacccgtctctcctcctcacagtaccaaagaagaacctgagcttatagttctgtct
gactctagtgaagagatggaggtaggggatctagcacctaccagcccctctccaccgccc
cctcctcgtctctcccagaaccaccaaggctacaccccaatcacaactcaatccaacaca
gaatccaagaaatccagctcaaaggagaaagagactattggtggttctgtgagggttcct
tctgtttcaccttcagatcaaggcctagatccagatcctcctagttataaaccaggttct
aatcctggttctgctggttctactagtctcgtggactgttctgcagagatgtcttggttc
atcccggccactccgcccctgccgtccaggaggaccagctctagctctacccagaccttt
agtagcatgcgtcgcactcagctctttcctaaggccaactcttcttcctcctcttctgca
gcgtcagttttctcctctcccaccctccctttcaggcctagccgccagacctccaaccca
cacagggtttctacacattctgcccagacagagtcctctatttctaggcagaaatcagac
agcagagggcttcgtgacgaccgctcttcccagaaatacaacagtggttcagtcggatct
gaccgtgctgcccgctccccagtcccctccaaatcccaaccaaaacgctcctgctttccc
cgcctgaccccctctctctccgtcatccccccaccagacccctccaccaagggtacccct
ctccacaacatcccccagccatacagctccactcccctttattcagatctacccaagccc
tctgctccgtctctggccttccctcttctgagagacggggagggggacaacggaaccagg
cagagagggagggggctggggatctctgggagcccatggaagagagggggactggcttct
ctgggcctgagagaggaatcggatgagatgatgaaaatggaggaactggaaaggagtgta
gtgaaagaagagcaggaggaagagatgggagaagacatggagaggtccagtaacagcttt
caacggagcttcctcgggatggacgagccgcccatggccttcgatgactcctggggccta
aacgctggaggaggggacacggacggagaacgatcccaggcagtgtgcttcagtctgagg
ctagagagcagcgtcggtggggctagtcctccaagacagggccggagagatggagagatt
gcaggaccatcctctacttttaccccctctcctcttcctaaagcctacaccacccactct
tactccaccccctctccacctccacccaacaccactacaccccaggccaacccagagatc
aacgctaacgtcctggacgctgagatctgggacgactggggggaggaagaggatgaggct
cttcctctctctcagagggtgaatcctgtggctctggctcagagagtggcccagctcaag
actccagtggccccccgtaggaaaggccagcagggccccctggtccccatcacccccatg
cccagctactctgacatggacacacctgacctcaagaacaagctcaaccgattcggtgtg
cgtcccttacccaagcgccagatgatcctgaagctcaaggagatccaccagtacacccac
caggtcgtcagctcagagtccgaggacgaggcaccttccctgggtcgccccagagctgtc
gggcccccacccaccacctcctccatggagcccaccagaaagccagtgtcctgtgcccag
actggggggtttaaagagcctagtggaagagcagcacctaccatctccctggtgaaactg
tctggtggggaggacatggagcctctctctgcctctcagggatccaatacgtcctccaca
gcacccagtgaagactctgagaggtctaatccagagcagtgcctatctgaccactcggat
aacgaagacattactgcctcgcagtctgcctccaagctccaggacaaccttgtcgctgtc
cgtcgtttcatccagtcagaccctgacctctacgggcagatcctcctctaccagcccctg
gtcctgtcagactttcaggacagactcaaggccgcaggtatccggctggggggcgccaag
ctactagactacctggattcgcagtgcattacgtttaccacagccaagcctggactgagg
ggaggaagaaagagaaaagtgaagggggcgaccagggctggagggaggggaaggagaggg
gcagctaaaacagcagattga
DBGET
integrated database retrieval system
