Salvelinus namaycush (lake trout): 120017623
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Entry
120017623 CDS
T07522
Name
(RefSeq) nuclear valosin-containing protein-like
KO
K14571
ribosome biogenesis ATPase
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120017623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120017623
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
120017623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
Nucleolin_bd
AAA_lid_3
RuvB_N
AAA_16
AAA_5
AAA_2
AAA_22
AAA_14
AAA_33
TIP49
NPHP3_N
Mg_chelatase
AAA_28
RNA_helicase
nSTAND3
AAA_17
AAA_18
Rad17
IstB_IS21
ABC_tran
NACHT
Viral_helicase1
Zeta_toxin
TsaE
AAA_3
Sigma54_activ_2
Vps4_C
Cytidylate_kin2
Motif
Other DBs
NCBI-GeneID:
120017623
NCBI-ProteinID:
XP_038816435
UniProt:
A0A8U0P179
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All DBs
Position
Sna22:17305775..17315842
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AA seq
888 aa
AA seq
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MNNRRCGVDNRLKQRVEQYLSNQSGQYVDITSMAHDLQRLYRMDYGRRNKTAFRIQVEKV
HGVICDESGLNDLENKHLAKRARHSEKDAGDGSSNLDDTTDSDEDLPEQPPINLMNNSLM
SLYKKGNPESGASPRRDKSASDSPAPEAQSTPQSVGTKVSAGGWFIDKGRGLEHDSILID
LCEEEAASLAGNKQTDVSMLEPEKTPKKGKCKKSKRRKEGASKGNDGDIEASIMNKKART
KSIELQYSTLKFEDVGGNEDTLTEVCKLLIHMRHPEVYQQLGVVPPRGFLLHGPPGCGKT
LLAQAVAGEMELPMLKVSAPELVSGVSGESEQKLRELFEQAVTSSPCILFIDEIDAITPK
REVASKDMERRIVAQLLTCMDDLNSLAVTAQVMVIGATNRPDSLDPALRRAGRFDKEICL
GIPDEAARLRILKTLCRKLKLPEDFDYRQLARLTPGYVGADLMALCREAAMSAVNRVLLE
RQDKNQGLVPMAEERAESEGPQGAGPLPQGPERFQASADTVIQEMTDLSHVPQGDKQQLP
LATETTFTGELCRLLSLLKSSESLSEEQLAGLCILMSDFQGSLASVQPSAKREGFATVPD
VTWDDVGALHDIREELTMAILAPVRSPEQFKALGLSAPAGVLLAGPPGCGKTLLAKAVAN
ESGLNFISVKGPELLNMYVGESERAVRQVFQRGRNSAPCVIFFDEIDALCPRRSGHESGA
SVRVVNQLLTEMDGLETRRQVFIMAATNRPDIIDPAVLRPGRLDKTLYVGLPPPSDRHAI
LLTITKGGSRPHLEQDVSLEEMAHDVRSDCFTGADLSALVREASVNALRAYLLTQPNPSY
TGHSYSNGPVADIRVSKQNFEDAFKKVRPSVSKRDQRMYEQLKESLTR
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaataacagacgttgcggagtggacaaccgactcaaacagagagttgagcagtatttg
agtaaccagagtggccagtatgttgacattacttcaatggcacatgatcttcagagactc
tacagaatggactatggcaggcgaaacaagactgcattcaggattcaggtggaaaaagtc
catggagtgatatgcgatgaatctggactgaatgatctggagaacaagcacttggccaag
agagccagacacagtgagaaggatgctggggatggcagcagtaacttggatgacactact
gatagtgatgaggaccttcccgaacaaccgcccatcaacctcatgaataactccctgatg
tccctgtacaagaagggcaacccagagagtggggcatctcccaggagggacaagtctgca
tcagacagccctgcccctgaggctcagtccacccctcagagtgttggtaccaaggtgtct
gcagggggctggttcatagacaagggcagaggcctggagcatgacagcatcctcattgac
ctgtgtgaagaggaggcagccagtcttgcaggaaataagcagacagatgtctcaatgctt
gagcctgagaagacaccaaaaaaaggcaaatgtaaaaaatctaaacggcggaaagaggga
gcgtcaaagggcaatgatggtgacatcgaggccagtatcatgaacaagaaagcgaggacc
aaatccattgaactacagtattcaacattaaagtttgaagatgttggaggcaatgaggac
acattgacggaggtgtgtaagctgctgattcatatgcgtcacccagaggtgtaccagcag
ttgggggtggtccctccacgggggttcctgctccatggcccccctggctgtggaaaaacc
ctgctggcccaagctgtggctggggaaatggagctgcccatgctgaaggtgtcggcgcca
gagctggtgtctggggtgtcaggggagtctgagcagaagctgagagagctgtttgagcag
gctgtgaccagctccccttgcatcctgttcatcgatgagattgatgccatcactcctaag
cgagaggtggcctccaaggacatggagagacggattgttgctcagctgctcacctgcatg
gatgacctgaactcattagctgtcacagcccaggtgatggttattggtgccaccaaccgg
ccagactctctggacccagcgctgcgccgtgctggacgctttgacaaagaaatctgtctg
gggatacctgatgaagcagctcgtctcagaattctgaagaccctgtgtcggaagctgaag
ctccctgaggactttgactaccggcagctggcgcgtcttaccccggggtacgtgggagct
gacctcatggcgctgtgccgcgaggccgccatgagcgccgtcaatagggtcctgctggag
aggcaggacaagaaccaggggctggtccccatggcggaggagagagcagagtccgagggg
cctcagggcgcaggtcctctcccacagggcccagagagattccaggcctcagcagacaca
gtgatccaggagatgacagaccttagccacgtaccacagggagacaagcagcagctgcct
ctggctactgagacaaccttcacgggggagctttgtcgcctgctgtccctgctgaagagc
agtgagtcgctgtctgaggagcagcttgctggcctgtgcatcctcatgtcagacttccag
ggttccctggccagcgtacaaccctctgccaagcgtgaaggcttcgccacggtgccagac
gtcacctgggacgacgtgggggccctgcatgacatccgcgaagagctcaccatggccatc
ctggcccctgtgcgttctcctgagcagttcaaagctctgggtctcagtgctcctgcaggg
gtgttgctagctgggcctcccggatgtggaaagaccctgctggccaaggctgttgccaat
gagtcaggacttaacttcatctctgtcaaggggccagagctgctgaacatgtatgtggga
gagagcgagcgggccgtgcgacaggtgttccagagaggacggaactctgccccttgtgtc
atctttttcgacgagatcgatgcactgtgcccccgccgctccgggcatgagtctggagcc
agtgtccgtgtggtcaaccagctgcttactgagatggacggactggagacccggcggcag
gtcttcatcatggcggctaccaatagaccagatatcattgaccctgctgtgctgagacca
ggtcgtctggacaagaccctgtatgtgggcctcccacctccatcagaccggcacgccatc
ttactcaccatcaccaaggggggcagcaggcctcatctggagcaggatgtgagtctggag
gagatggcccatgacgtgcgcagtgactgcttcactggggcagacctgtctgcgttggtg
agggaagcctctgtcaatgctctgagagcctacctcctgacccaacccaacccatcttac
acaggtcacagctactccaacggccctgtggccgacatcagggtcagcaagcagaacttt
gaggacgccttcaagaaagtacggccgtctgtgtctaaaagggaccaacgtatgtacgag
cagctaaaggaatctcttacaaggtga
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