Salvelinus namaycush (lake trout): 120017630
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Entry
120017630 CDS
T07522
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120017630
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
120017630
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
120017630
NCBI-ProteinID:
XP_038816443
UniProt:
A0A8U0P1U0
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Position
Sna22:17503645..17537499
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AA seq
1981 aa
AA seq
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MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMLKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPHRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDTSELGGGGGRSGSSEGGGGDYKGR
SPQQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVSLSLEEGSSKGMYKGAGSSSSTG
GKAKIAQGGKSSSGGSGVVGGKHQAAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASN
TFDFTPPPPEMLPSPSPLLREPHKYSGGGKGAGNTPKERAFEGKRVTLAATLPATEPQPA
FPTKENTAVIVEAAIAVEKVVNVEAEMNGNEEAAIAGDARPSTSVVTVTAAAAKSPRGAR
RETGTEAVALPNQAPEGAAEAGAGGDPVGEDDYQAYFLNSANEEGAERVSENNNEEEPDI
FAGIKPLEQEGQMEVLFACAEALHAHGYSNDACRLAVELAGDLLANPPDLKVEQPQTKGK
KSKVSTSRQTQVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVK
LAYQESEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPV
VSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALA
LMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAASSQRSPSKHATHTAHGHG
GATGGVSKHAPNTTAAAGSSSSLQAVAAGGAAGQQAGLAGSGVQNNSTAGECVSEAREQA
DGVQPASCDQPSEAVPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSSA
PETTSDSSPTLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAK
STDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGH
QGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECW
DGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQVHV
RYSSVLQKTHRTTHDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGSG
AQREGPGRCGANGGAGRRPPETGHGVMDNIGNMDSSGVATVTASVTAATVVPVISVGSTI
YQSHALPGSAMAHPHTQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPVSGGAYPQ
CVCVPSQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGVPVPSMTQIAVHPYHTETGLP
LSTTVAGAASFSPFYPVGGVHSGATIQAIQGSSLPGMSSQPVSLVSAPFPSEDEQHSQPI
SQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVY
QFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRL
IHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFS
P
NT seq
5946 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgttcgccgagtgggaagacggagagaggttctccttcgaagattctgac
cggttcgaggaggactcgctctgctcctttatatcagaggctgagagtctgtgtcagaac
tggaggggatggagaaaacagtctgctggaccaaattctcctacagtgaagattaaagat
ggtcaggtcatccctctggtggagctatcagccaagcaggtggcattccacatcccgttt
gaggtggtggagaaggtctaccctcctgtccccgagcagctgcagctccgcatcgcctac
tggagcttcccagagaacgaggaggacatccggctgtactcgtgtctggctaacggcagc
cctgatgagttccagcgaggggagcagctgtacaggatgagggctgtcaaagaccctctg
cagataggtttccacctcagtgccaccgtggtgtcgccccaggctggccaatcaaaaggg
gcgtacaatgtggctgtcatgttcgaccgctgccgcatcacttcctgcagttgcacctgt
ggagccggggccaagtggtgcgcccatgtggtggccctctgcctcttcaggatccacaac
gcgtctgcagtgtgcttgcgagcccccgtgtcagagtccctgtcccggctgcagagggac
cagctgcagaagtttgcccagtacctcatcagtgagcttccccaacagattttgcccaca
gcccagaggctcctggatgagctcctgtcctcccagtccacagccatcaacacagtgtgt
ggggctcccgaccccactgctggcccctcagcctctgatcagagcacctggtatctagat
gagtctacgctcagtgacaacatcaagaagactctgcacaagttctgtggcccctctcct
gttgtcttcagtgacgtcaactccatgtacctgtcatccacggagcctccggcggcggca
gagtgggcgtgtctgctgaggccgctgagggggcgggagcccgaggggatctggaacctc
ctgtccatcgtcagggagatgctcaagaggagagacagcaatgctgcacccctactagag
atcctcactgagcagtgtctcacttatgaacagatcattggctggtggtacagcgtgcgt
acgtcggcatcccacagcagtgccagcgggcacacggggcgcagtaacgggcagtcggag
gtggcagcccacgcctgcgccagcatgtgtgatgagatggtcgttctgtggaggctggct
gtcctagaccccaccatgagccctcataggcgtttggagctggctgcccagctcaagcag
tggcatctgaaagtgattgagatcgtgaagcgaggacaacaccgcaagtccctggacaaa
ctgttccagggcttcaagccagccgtggagtcctgctacttcaactgggaggtggcctac
ccactgccaggcatcacctactgcagtgcagacaagaagagcgcttccttctgctgggcc
agggcagtgcagcagcagagaggggccaaggctggcctggctggagacacctctgaactt
ggaggaggaggggggagatctggcagctctgagggaggtgggggagactacaagggtaga
agtccccaacaagaagtggcggtcaggcccaaagagaccatcgtgagcaaaaggaagggg
ttgtcggccgggggcggaggaggggtcctagtgcggctagggggcagtgtgtctctctct
ctagaggagggcagtagtaaggggatgtacaaaggcgcaggttcctcctcgtccactggg
ggcaaggctaagatagcccaggggggcaagtcgtcctctgggggatcaggagtggtaggg
ggaaaacaccaagcggccaagcggcgcaccagcagtgaggacagctccctcgagcctgac
atggccgagctgagcctggatgatggctccagtctggcgctgggtgctgaggccagcaac
acctttgacttcacgcccccgccgcctgagatgctgccctcaccaagcccgctactcaga
gagccacacaaatacagtgggggagggaaaggggccggaaacacgcccaaggagcgcgcc
ttcgagggcaaacgggtcacccttgctgccaccctgcctgccactgagccccagcccgcc
ttccccaccaaagagaacactgctgtcatcgtggaagcagccattgctgtggagaaggtg
gtgaatgtggaggcggagatgaatggaaatgaggaggcggccatcgctggagacgctcgg
ccctccacctcggttgttaccgtgactgcagctgctgccaagtcaccgcgtggtgcccgc
cgagaaactggcaccgaagccgtagccctgcccaatcaggccccagagggagcagcagaa
gcaggggcaggaggagaccctgtaggagaggatgactaccaggcctactttctgaattca
gctaatgaggagggggcagagagagtgtcagagaacaacaatgaggaggaaccagacatc
tttgctgggatcaagccactggagcaggagggccagatggaggtgctgtttgcgtgtgca
gaggccctccacgctcacggctacagcaacgatgcctgcagactggcagtggagctggct
ggagacctgctggccaaccctccagacctgaaggtggagcagccccagaccaagggcaag
aagagcaaggtgtccaccagcaggcagacccaggtggccaccaacaccctggttaagacc
tccttcctgctgacggtgctgagcgagaggctggagcttcacaacctggccttcagcacg
ggtatgttctctctggagctgcagaggcccccagcctccaccaaggccctggaggtcaag
cttgcctaccaggagtcagaggtggtggctctgctgaagaaaatccctctgggcctggtg
gagatgacgtccatacgggacagggccgagcagctccgagacgggaacttctgtgactac
aggcccgtcctgcccctcatgctggccagcttcatatttgatgtgctgtgtacccctgtt
gtgtcccccacaggttcccgtccgcctagccgtaatcggaacaacgagatgcctggagat
gaggagctgggctttgaggcggctgtagcagcactgggtatgaagaccacagtgagcgag
gcagagcatcctctgctgtgtgaggggaccaggagagagaaaggagacttggctctggcc
ctcatgatcacatacaaggatgaccagagcaagctgaaaaagatcctggacaagctgctg
gacagagagagccagacccacaagccccagaccctgagctccttctactccagcaagcca
gctgccagcagccaaaggagcccgtccaagcacgctacccacactgctcacggacacgga
ggtgccaccggaggggtgtccaaacatgcccccaacaccacagctgcagccgggtcctcc
tcctccttgcaagcggtggctgctgggggggcggcaggacagcaggcgggtctggcgggc
agtggggtgcagaacaactccacagccggagagtgtgtcagtgaggccagagagcaagca
gatggcgtccagcctgcgtcatgtgaccagccgagtgaggctgtcccattcaagccagag
ggcacagtgccgagccgcttggcgctgggaggacggggggcatacagcgggcgctgctgg
ggctctcctgtccgccagaagaagaaacacacaggcatggcgagtatcgacagcagtgct
cctgagaccacctcagacagctcccccacccttagtcgacgcccactcagagggggctgg
gccgcagcttcctgggggaggggccaagacagtgacagcatcagcagctcctcttctgat
tcgctaggctcctcctcatccagtggctctcgcagggccggaggcggagctagagcaaag
agcacagacaccagcaggtataaagggcgtcgtcccgagtgccatgcaccacatgtgccc
aaccaaccgtcggaggcggcggcccacttctacttcgagctggccaagaccgtgctgatc
aaggccgggggcaacagctccacctccatcttcacccagccctcagccagtggaggccac
caggggccccaccgcaacttgcacctctgtgcctttgagatcggcctgtacgccctaggc
ctgcacaactttgtctcacctaactggctctccaggacctactcctcccacgtctcctgg
atcacaggccaggccatggagatcggcagtgctgccctcaacatcctggtggaatgctgg
gacgggcacctcacccctcccgaggtggcatcactggccgacagagcatcacgggcgcgg
gatcctaacatggttcgcgctgcggctgagctggccctaagctgcctgccccatgcacac
gccctcaaccccaatgagatccagagggccctggtgcagtgcaaggaacaggtacatgtc
cggtactcttcagttctgcagaagacacatcggactactcatgacaacgtgatgctagag
aaagcctgtatggctgtagaggaggcagccaaggggggcggtgtgtaccctgaggttctg
tttgaggtggcccaccagtggtactggctctatgagcagacagtaggaggggggtcaggg
gcccagcgtgaaggcccgggacgctgtggggccaacggtggagctggaaggaggccccca
gagacgggccacggtgtaatggacaacattggcaacatggattcctccggcgtcgctacg
gtgacggcctcagtgacagcagcgactgtggtgcccgtcatctctgtgggctccaccatc
taccaatcacacgcccttcccggctcggccatggcccacccccacacccagggcctgcac
ccctacaccaccatccaggcccacctacccacagtctgcaccccccagtacctggggcac
ccactgcagcacgtcccccggcccactgtattccctgtgtcagggggtgcctacccacag
tgtgtatgtgtgccctctcagggaatgcacccggcctttatcggtgcccagtacccgttc
tcagtggccactggcccccatccgcccatggcagcgacagcggtcaccttccccggtgtt
cccgtgccgtccatgacccagatcgccgtccacccctatcacaccgagaccggcctgcct
cttagcaccactgtagcaggagccgcatctttttcccctttctatccagtaggtggcgtc
cattcaggcgccacaatccaggccattcaggggtcatctcttcctggaatgtcttctcag
cctgtctcattggtcagcgcccccttcccgtctgaagacgagcagcatagccagccaatc
agccagcagggccttcactacctgcactcagcatacagagttggcatgctagctttggag
atgcttggcaggagggctcacaacgaccatcccaataacttctcccgcagccccccatac
acagaggacgtcaagtggctcctgggcctggctgcacggctaggggtgaactacgtgtac
cagttctgtgtgggtgcggctaagggcgtgctcagccccttcgttcttcaggagatcatc
atggaggctctccagagactgaaccccgcccacatccatgcccatctccgcacgcctgcc
ttccaccaactggtgcaacgctgccagcaggcctacctacagtacatccaccaccggctg
atccacctgaccccggccgactacgacgactttgtcaacatcatccgcagcgcccgcggg
gccttctgcctgacccctgtgggcatgatgcagttcaacgacgtgctgcagaacctgaag
aggggcaagcagaccaaggagctgtggcagcgcatctctctggagatggccaccttctcc
ccatga
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