Salvelinus namaycush (lake trout): 120017709
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Entry
120017709 CDS
T07522
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04517
IgSF CAM signaling
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120017709
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120017709
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
snh04812
]
120017709
Cytoskeleton proteins [BR:
snh04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
120017709
Intermediate filaments
Intermediate filament-binding proteins
120017709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
CH_2
Motif
Other DBs
NCBI-GeneID:
120017709
NCBI-ProteinID:
XP_038816580
UniProt:
A0A8U0P1R5
LinkDB
All DBs
Position
Sna22:complement(27026788..27182196)
Genome browser
AA seq
2351 aa
AA seq
DB search
MTSVAADYDHMEIQQQQQQQQQQQQYSGDTVNNRWDVDEWDNENSSARLFERSRIKALAD
EREAVQKKTFTKWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRI
HCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETEDNK
EKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLIDFDKLKKSNA
HHNLQNAFNLAEQHLGIHKLLDVEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRI
GKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTV
EKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPRDGKLISDINKAWERLEKSEHERELAL
RTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETD
IGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARRTRLEMNLGL
QRVFQEMLHIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQANRVKAVNNN
AQKFAIDAEGYKPCDPQVIRDRVAHMEFCYAELSQLAAERCARLEESRRLWKFFWEMAEE
EGWIREKEQILSSEDCGKDLTGAVRLLSQHRAFEDEMSGRAGHLQQTIKQGEELVAADHF
GADKIRKRIQDIQAQWAALEGLSAVRKARLEEACNLHQFQADADDIDAWMLDVLRIVSSA
DVGHDEFSTQALVKKHKDVAEEITSYRPVIDALHEQSKTLPKEQTGSEEVQGRLAGIEER
YKELAELTRLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKLEDLEVVQHR
FESLEPEMNNQASRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFRDLVDLKKDS
LNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIED
KLGELGKEGECLATEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEASKLQQFLRE
LDDFQSWLSKTQTAIASEDMPNTLTEAEKLLAQHEGIKNEIRNYEEDYQKMRDMGEMVTQ
GQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQAEAFLNNQEY
VLAHTEMPRTLEGAEGAIKKQEDFMTTMDANEEKIKAVVDTGRRLVSDGNVNADRIQEKV
DSIDERHKKNRMVASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLH
SKWLKHQAFMAELQSNKEWLDKIEKDGMQLMAEKPETESMVKEKLAALHKMWDDLESTTQ
TKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKKQQMLESQVG
VRQKEVEELQSQAQVLSQEGKDTDEVDGQRRIVEKKFQQLLDPLRKRKGNLMASREIHQF
NRDMEDEILWVEERMPLAISTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFERGQQ
VLKDDDDSLSGEGIHQRLADLRRLWAQILEETGKRHGRLEEAHKAQQYYFDAAEAEAWMS
EQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSQTSRGLTAAGHPESERI
GMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQD
YEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHTDAATIAEWKDGLNEAWAD
LLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVETLQRMHTTF
EHDIQALGTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEACDGRRVRLLD
TGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNNSFTN
CIELGKSLLARRHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFGRDAGVA
ESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRR
QQEEEERKRNPPPAETQTDDASPQQREGEQVSQNGLPSDQDSPRDNGEESDIVNGVEEPS
PGGSPSEARKVMPSQAATLPAKSQDSAPANQMEGYLHRKHEWEGHNKKASSRSWHNVYCV
INNREMGFYKDHKSASQGIPYHNQIPISLKDAACEVALDYKKKKHVFKLKATDGNEYLFQ
ANDDEEMNSWMQAISSAASSDKTEMTPSSHSTPASSRAQTLPASVALATESSPGKREKDK
EKRFSLFSKKK
NT seq
7056 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctgtagccgccgattacgaccacatggagatccagcagcagcagcagcagcag
cagcagcagcagcagtatagtggtgacacggtcaacaaccgctgggatgttgacgagtgg
gacaatgagaacagctcggccaggctgtttgaacgctcccgcataaaggctttggcagat
gagcgcgaggcggtgcagaagaagaccttcaccaagtgggtcaactcccacctagccaga
gtgtcctgcaggatcactgacctctatatggacctgagggatggacgcatgctcataaaa
ctactggaggtcctctctggggagagactgcccaagcccactaaggggcgcatgcgtatc
cactgcctggagaacgtggacaaggccctgcagttcctcaaggagcagagggtccatctg
gagaatatgggctcccacgacattgtcgacggcaaccaccgcctcaccctcggcctaatc
tggaccatcatcctccgcttccagatccaggacatcagagtggagacggaggacaacaag
gagaagaagtctgctaaagatgccctgctactgtggtgccagatgaagactgcaggatat
cccaacgtgaacattcacaacttcagcaccagctggagagatggcatggccttcaacgcc
atcctccacaaacacagacctgacctgatagactttgacaagctgaagaagtccaacgca
caccacaacctgcagaatgccttcaacctggcagagcaacacctgggtatccacaagcta
ctggacgtagaggatatcagcgtggaccacccggatgagaagtccgtcatcacctatgtt
gtgacctactaccactacttctccaaaatgaaggctctgaaggtggagggaaaacgtatt
gggaaggtgctggacaatgccattgagacagataacatgattcagaaatatgagagtctg
gcctctgacctcctggaatggattgaacagaccatcatcatcctcaacaaccgcaagttt
gccaactccttagtgggggtgcagcaacagcttcaggccttcaacacctaccgtaccgtg
gaaaagccccccaagttcacagagaagggcaacctggaggttctcctcttcaccattcaa
agtaagatgagggccaacaatcagaaggtctacatgccacgggatggcaaactcatctca
gacatcaacaaggcctgggagaggctggagaagtcggagcatgagagggaactggcactg
aggacggagctgattcgtcaggagaaactggagcagctggcccgccgcttcgaccgcaag
gccgccatgagagagacatggctgagtgaaaaccaacgcctcgtctcgcaggacaacttt
ggcttcgacctgcaggcagtggaggctgccaccaagaagcacgaggccatcgagacggac
atcggcgcctacgaggaacgtgtgcaggctgtgctctctgtggccaaggagctggaggcg
gagaactaccacgacatcaagcgcgtgactgcgaggaaggacaacgtgctgcgtctgtgg
gagtacctgctggagctgctgaaggcccggcgcacccgtctggagatgaacctgggcctg
cagagggtcttccaagagatgctccacatcatggactggatggacgagatgaagatgctg
ctgctgtcccaggactatgggaaacacctgctgggagtggaggacctgctgcagaagcat
gctctggtggaggctgatatcgccatccaagccaaccgcgtcaaagccgtcaacaacaac
gctcagaagttcgccatcgatgcagagggctacaagccctgtgaccctcaggttatccgg
gaccgcgtggcccacatggagttctgctacgcagagctgagccagctggctgccgagcgc
tgcgcccgcctggaggagtcccgccgcctctggaagttcttctgggagatggccgaggag
gagggctggatccgggagaaggaacaaatcctgtcctcggaggactgtggcaaggacctg
acgggcgccgtgcgcctgctgagccagcatcgcgccttcgaggacgagatgagcggtcgc
gctggccacttgcagcagaccatcaaacagggagaggagctggtggccgcagaccacttt
ggagccgacaagatccgcaaacgcatccaagacatccaggcgcagtgggcggccctggag
gggctgtctgcagtcaggaaggcccggctggaggaggcctgcaacctgcaccagttccag
gctgacgcagacgacatcgacgcctggatgctggatgtactccgcatcgtgtccagtgcc
gacgttggccacgacgagttctccacccaggccctggtcaagaagcacaaggacgtggcc
gaggagatcaccagctaccgaccagtcatcgacgccctgcacgagcagtccaaaacccta
cccaaggagcagactggctcagaggaggtgcaggggcgcctggcaggcattgaagagcgc
tacaaggagttggctgagctgacccggctgaggaagcaggccctgcaggatgccctggcc
ctctacaagatgttcagcgaggcggacgcctgtgaggtgtggatcgatgagaaggagcag
tggctcaacagtatggagataccagagaaactggaagatctggaagtggttcagcacagg
tttgagagtctggagccagagatgaacaaccaagcatcccgcgttgccgtggtgaaccag
attgctaggcaactaatccacagtggtcaccccagtgagaaggagatcaaagcccaacag
gacaaactcaacaccagatggagccagttccgtgacctagttgacctgaagaaagactcc
ctcaactcagctctgggcgtgcagaactaccacctagagtgcaatgaaaccaagtcgtgg
atccgtgagaagaccaaggtgatcgagtccacccaggagctgggcaacgatcttgccggg
gtcatggccctacagcgcaaactcaccggcatggagcgtgacctggctgccatcgaggac
aagctgggagaactggggaaggagggggagtgcctggcgactgagcaccctgaccaggcc
cagggcatcatgggtcgtctgggggagatcacaggggtgtgggatgagatgaagggcacc
ttgaagaatcgcgaggagtctctgggagaggccagcaagctgcagcagttcctccgggag
ctggatgacttccaatcatggctgtccaaaacccagacggccatcgcctcagaggacatg
cccaacacactgacggaggccgagaagcttctggcgcagcacgagggcatcaagaacgag
atccgcaactacgaggaggactaccagaagatgagggacatgggcgagatggtgacccag
ggccagactgacgcccagtacatgttcctgaggcagaggctgcaggccctggacacgggc
tggaacgagctgcacaagatgtgggagaaccgtcagaacctactgtcccagtcccatgcc
caccagctgttcctcagggacaccaagcaggctgaggccttcctcaacaaccaggagtat
gtgctggcccatacagagatgcccaggactctggagggggcggagggagccattaagaag
caggaggacttcatgaccaccatggacgccaacgaggagaagatcaaagctgtggtggac
accggacgcaggctggtcagcgatggaaacgtcaacgctgaccgcatccaggagaaagtg
gactctatcgatgagagacataagaagaaccgcatggtggccagtgagcttctctgtaag
ctgaaggataacagagacctgcagaagttcctccaggactgccaagagctctccctgtgg
atcaatgagaagatgctcacggctcaggacatgtcgtacgacgaagccagaaacctccac
agcaaatggctcaaacaccaggcgttcatggccgagctgcagtccaacaaggagtggctg
gacaagatcgagaaggatggaatgcagctgatggctgagaagccggagacagagtccatg
gtgaaggaaaagctggcagcgctccataagatgtgggatgacctggagtccaccacccag
accaaggccaagtgtctgtttgatgccaacaaggccgagctgttcacccagagctgtgcc
gacctagacaagtggctggtaggagtggatggacagatccaatcagacgactatggcaaa
gatctgaccagtgtcaacatcctgctcaagaaacaacagatgctggagagccaggtgggc
gtgcgtcagaaggaggtggaggagctgcagagccaggcccaggtcctcagccaggagggt
aaggatacggacgaggtggacggccagcgccgcatcgtggagaagaagttccagcagctg
ctggaccctctacggaagaggaagggaaacctcatggcctcccgcgagatccaccagttc
aacagagacatggaggacgagattctctgggttgaagagcgaatgccacttgcaatatca
acagaccacggaaacaacctgcaaactgtccagttactcatcaagaaaaaccagaccctg
cagaaggagatccagggccaccagccccgctgtgatgacatctttgagcggggccagcag
gtcctcaaggatgacgacgacagcctcagcggcgaggggatccaccagcggctggccgac
ctgcggcgcctgtgggcccagattctggaggagacgggcaaacgccatggacgcctggag
gaggcccacaaggcccaacagtactactttgatgctgctgaagccgaggcctggatgagc
gagcaggagctctacatgatgtcagaggagaaagccaaggatgagcagagctctgtggct
atgttgaagaagcaccagatactggagcaggctgtggaagactacgctgaaactgtccac
cagctgtcccagacaagtagaggcctgacggccgccggacaccctgaaagtgagcggatc
ggcatgcgtcagtcccaggtggataagctgtacgcgggcctcaaggacctgtcggaggag
aggagggggaagctggacgagaggttccgtctgttccagctcaacagggaggtggatgac
ctggagcagtggatcgctgaaagggaagtagtggctgggtcacatgagctgggacaggac
tacgaacatgtcacgatgcttcaggagcgtttccgtgagtttgctcgcgacacgggcaac
atcggtcaggagcgtgtggacaccgtcaaccagttggcggacgagctcatcaactcgggc
cacaccgacgcagcaacaatcgcggagtggaaggacgggctgaatgaagcgtgggccgac
ctgctggagctaatcgacacacgcacgcagatcctggcggcgtcctttgagctgcataag
ttctaccatgacgccaaggagatcctcaaccgcatcctggacaaacacaagaagctgcct
gaggagctgggccgagaccagaacacagtggagaccctgcagaggatgcacaccaccttt
gaacacgacatccaggccctggggacacaggtgaggacgttgcaggaagatgctgtgcgt
ctgcagtctgcctacgccggagacaaggctgatgacatccaaaagagagagggtgaggtg
ctggaggcctggaggaccctgctggaagcctgcgacggccgcagggtcagactgctcgac
accggcgacaagtttcgcttcttcagcatggtgcgagacctcatgctctggatggaggac
gtcatccgcctcatcgaggctcaggagaagcccagggacgtgtcgtccgtggagctcctg
atgaacaaccaccaaggcatcaaggctgagatcgacgcccgcaacaacagcttcaccaac
tgcattgagctgggcaagtccctgttggcaaggagacactatgcattagaggagatcaaa
gagaagttactacagttgacagacaaaaggaaagacatgattgacaagtgggaggacaga
tgggagtggctaagattggttctggaggtgcaccagtttggtagggatgcgggtgtggcc
gagtcatggctgctgggacaggagccgtacctgtccagcagggagatgggtcagaacgtg
gacgaggtggagaaactcatcaagagacacgaggcctttgagaagtccgctgccacctgg
gaggagcgcttctcagcgctggaacggctgactacgatggaattactggaagtgagaaga
cagcaagaggaggaagagaggaagaggaatccaccacctgcagagacccagacggacgat
gcatcgccacagcagagggagggtgagcaggtgtctcagaacggactgccatcggaccag
gactcccctcgggacaacggagaggaaagtgacatcgttaatggggtggaggagcccagc
ccaggtgggtcgcccagtgaagcacgcaaggtcatgcccagccaggctgccacactcccg
gccaagtcccaggactcagccccagccaaccagatggaaggatacctgcaccgcaaacac
gagtgggagggtcacaacaagaaggcatccagcagatcctggcacaatgtgtattgcgtg
atcaacaaccgggagatgggcttctacaaagaccataagagtgccagccaggggatccct
taccacaaccagatccccatcagcctgaaggatgctgcgtgtgaggttgccctcgactac
aagaagaagaaacatgtgttcaaactgaaagctacagatggcaatgagtatctcttccaa
gccaacgatgatgaggagatgaactcgtggatgcaagccatctccagcgctgcgtcctct
gataagacagagatgacccccagcagccatagcacccccgcctccagccgagcccagacc
ctgcccgcctccgtcgccctggcaactgagtccagccctggcaagcgtgagaaggacaaa
gaaaagcgcttcagccttttcagcaaaaagaaatag
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integrated database retrieval system
