Salvelinus namaycush (lake trout): 120017907
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Entry
120017907 CDS
T07522
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04120
Ubiquitin mediated proteolysis
snh04137
Mitophagy - animal
snh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120017907 (prkn)
04120 Ubiquitin mediated proteolysis
120017907 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
120017907 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120017907 (prkn)
04121 Ubiquitin system [BR:
snh04121
]
120017907 (prkn)
03029 Mitochondrial biogenesis [BR:
snh03029
]
120017907 (prkn)
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
120017907 (prkn)
Membrane trafficking [BR:
snh04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
120017907 (prkn)
Aggrephagy
Other aggrephagy associated proteins
120017907 (prkn)
Xenophagy
Other xenophagy associated proteins
120017907 (prkn)
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
120017907 (prkn)
Mitochondrial biogenesis [BR:
snh03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
120017907 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Rcat_RNF216
ADAMTS_CR_3
Rad60-SLD
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
120017907
NCBI-ProteinID:
XP_038816792
UniProt:
A0A8U0P1Z3
LinkDB
All DBs
Position
22:complement(13674906..13765890)
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AA seq
458 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEEGASIAVLKEKVGRLQGVQPEQLRVIFAGRELLSDCTLQGCD
LPEQSTVHVVLPPPGSGRCSDLALQHRLGRGVDSLTRLDLTASRLPSTSTGLAVILETDD
EQRAREEPEHTEPRPHSSFYVYCKSVCRAIQPGKLRVRCRACKQGTLTLSRGPSCWDDVL
LPERIHGVCQSEGCLGRVAEFYLKCAAHPTSDDDTSVALDLVMPNVRDVPCIACTDIMSP
VLVSQCPDRHVICLDCFHMYCVTRLNERQFIHHPDVGYSLPCAAGCPDSLITELHHFRAL
GDEQYERYQQYAAEECLLQMGGVLCPAPGCGAGLLPEEDKRMIQCLLSNGLGCGFVFCRD
CKEGFHEGECRVRSSPVSGGALQGYVVDEEAALQARWEQASQETIDETTRPCPHCKVPVE
KSGGCMHMVCPRAQCKFEWCWVCRVEWNRECMGNHWFG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgtatgtgaggtttaactccagccatggcttcccagtggagctggaggagggg
gccagcatcgcagtgctgaaggagaaggtggggaggctgcagggggtacagccggagcag
ctgagagtcatctttgctggcagagagctgctcagcgactgcaccctccagggctgtgac
ctcccagagcagagtaccgtgcacgtggtgctgcctcccccagggtcgggccggtgctct
gacctggccctgcagcaccgtctgggtcgaggggtggacagcctcacccgcctggacctc
accgcctcccgcctgccctctacctccactggcctggccgtcatactggaaactgatgac
gagcagagagccagggaagagcctgagcacacagagcccagacctcacagcagcttctat
gtgtactgcaagagtgtgtgccgggccatccagccggggaagctacgcgtgcgctgccga
gcctgcaagcagggaaccctcaccttgagccggggcccgtcatgttgggacgatgtcctc
ctcccagagcgtatccatggcgtctgtcaatcagagggttgccttggcagagtagcggag
ttttacctgaagtgtgctgcccaccccacctctgatgatgacacgtctgtggccctggac
ctcgtcatgcccaatgtgcgggatgtcccatgcattgcctgcacagatatcatgagtcca
gtgttggtgtcccaatgtccagaccgccatgtcatttgtctagactgcttccacatgtac
tgtgtgacccgcctcaacgagcgacaattcatccaccacccagatgtcggctactcactt
ccatgtgcagctggctgcccagactctctcataacggagttgcatcacttccgggcccta
ggtgatgagcagtatgagcggtaccagcagtatgcagccgaggagtgtctcctccagatg
ggaggagtgttgtgtccagcccctggatgtggagcagggctgctgccggaggaggacaag
aggatgatccagtgtctgctcagcaacggtttgggatgcgggtttgtgttctgccgtgac
tgtaaggaaggattccatgagggggaatgtcgtgtgaggtcatcacctgtctcaggagga
gccctgcagggttatgtagtggacgaggaggcagctcttcaggctcggtgggagcaggcc
tcgcaggagactatagacgagaccacccgtccatgtccacattgcaaggtcccagtggag
aagagtggtggctgtatgcacatggtgtgtccccgtgcccagtgtaagtttgagtggtgc
tgggtctgtcgtgtggagtggaacagagagtgtatgggcaaccactggttcggctga
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