Salvelinus namaycush (lake trout): 120017966
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Entry
120017966 CDS
T07522
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
120017966
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120017966
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
120017966
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GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
120017966
NCBI-ProteinID:
XP_038816854
UniProt:
A0A8U0TIQ4
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Position
Sna22:32252360..32607103
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AA seq
1113 aa
AA seq
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MDVIIPFSPDVPCDNNGQRMWWAFLASSMVTFFGGLFIILLWRTLKYLWTVCCHCNIKKK
VVLVFALSIGALGIYFIDSSDPIESCQNFYKDFTLQIDMFFNVFFLLYFGLRFIAANDKL
WFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKL
VNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQSLSYWECVYLLMVTMSTVGYGDVYA
KTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKHIVVCGHITLES
VSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVK
IESADACLILANKYCPDPDAEDASNIMRVISIKNYSPKIRIITQMLQYHNKAHLLNIPSW
NWKEGDDAICLAELKAGFIAQSCLAQGLSTMLANLFSMRSFIEIEEDTWQKYYLEGVANE
MYTEYLSSAFVGLSFPAVCELCYVKLKLLLIAIENKSELGESSILINPGNHVKMQEGTLG
FFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLIYFEDEHPSTLSPKKKQRNGGM
RNSPNNSPNMMRHDPLLIPGNEQMENMDMNLKQYDSTGMFHWCPSKEIEKVILTRSEASM
TVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKPIVFVGSLEYLRREWETLHN
FPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKECILASLNIKSMQF
DDSIGLLQANSQGFTPPGMDRSSPDSSPVHGLARQASVTTGANIPIITELVNDSNVQFLD
QDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEAL
LAEENALQGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCF
GIYRLRDAHLATPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRTSLSHSSHS
SHSSSKKSSSVHSIPTTNRQNRSSKAREAGHKQNATRMNRMSQERKWFTDEPENAYPRNI
QIKPRSTHMANQVNQYKSTSSLIPPIREVEDEC
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgatcatccccttctcgccagacgtgccctgcgacaacaatggccagcgcatg
tggtgggcattcctcgcctcctccatggtcacgtttttcgggggtctcttcatcattctc
ctgtggaggaccctcaaatacctgtggaccgtctgctgccactgtaacatcaaaaagaag
gttgtgctagttttcgctctcagcattggagcacttggaatatactttatagattcttct
gatcccatagaatcctgtcagaatttctacaaagatttcacgttacagatcgacatgttc
ttcaatgtcttcttcctcctctactttggcttgcggttcatagcagccaatgataagctg
tggttctggctggaggtcaactcagttgtggacttcttcactgttcctcctgtcttcgta
tctgtctacttgaacaggagctggctgggcttaagattcctgagagccttgagattgata
cagttctctgaaattttacagtttttgaatatcttaaaaacaagcaattccatcaagctg
gtgaacctgtgttccatcttcataagcacatggctaacagctgccggattcatacatttg
gtggaaaactcaggggatccttgggaaaacttccaaaattcccagtcactttcctattgg
gaatgtgtctacttgctcatggtcactatgtcaacagtgggctacggggatgtctatgca
aaaaccaccctgggacgcctgttcatggtcttcttcatcctcgggggtttggccatgttt
gccagctacgtccctgaaatcatagagttaataggaaaccgcaagaaatatggtggttcc
tatagtgcggttaatgggagaaagcacattgtggtttgtggtcatattacgctcgaaagt
gtctccaacttcctcaaagacttcctacacaaggacagggatgatgtcaatgtagaaatt
gtttttctccataatatttcccctaatcttgagctggaagccttgttcaaacggcacttt
acccaggtagagttctaccagggatctgttctcaaccctcacgatctggccagagtgaag
attgagtcagcagacgcctgtctgattctggctaataagtactgtccagatcccgatgct
gaagacgcctccaacatcatgagggtcatctctatcaagaactattcccccaagatacga
attatcactcagatgttacaataccataacaaggctcacctgctcaacattcctagctgg
aactggaaggagggggatgatgcgatctgtctagcagagctgaaggctggcttcatagct
cagagctgtctggcccagggcctctccaccatgctggccaacctcttctccatgaggtcc
ttcatcgagattgaagaggacacatggcagaagtactatttagaaggggtagctaatgag
atgtacacagagtatctgtccagtgcctttgtggggctctccttcccagcagtctgcgag
ctgtgctacgtgaagctgaagctgttgcttatcgccatcgagaacaaatcggagctggga
gagagcagcatcctcatcaacccggggaaccacgtaaagatgcaggaaggaactctgggg
ttcttcatcgccagtgacgccaaagaagtaaagagagcatttttctactgcaaagcttgt
cacgatgacatcacagaccccaaacggatcaaaaagtgtggctgcaaacgactgatttac
tttgaagacgagcacccgtcaactctgtcacccaaaaaaaagcagcggaacggaggcatg
cgaaactcacccaacaactcccccaacatgatgaggcatgatcctctactaatccctggg
aacgagcagatggagaacatggacatgaacttgaagcagtatgactccacaggaatgttc
cactggtgtccgtctaaagagatcgagaaggtcatcctgacccggagtgaggcatccatg
acggtgttgagcggccatgtagtggtctgtatatttggagatgtcacgtccgctctagtg
gggctgcgaaacttggtgatgcctttgagagccagcaacttccattatcacgagctgaaa
cccatagtgtttgtgggctcgctggagtacctgaggagagagtgggaaaccctacacaac
ttccccaaggtctccatactacctggtacgccattaagccgtgcagatttaagggctgtc
aacatcaacctctgcgacatgtgcgtgatactgtcggccaatcagaacaatatcgacgac
gcctcgctgcaggataaggaatgcattctggcatcgctcaacataaagtctatgcagttt
gacgacagcatcgggctcttgcaggcaaactcccaaggtttcacgcctcctggaatggac
cggtcctctccagacagcagtccagtacatggtttagcacgccaggcctccgtcaccact
ggcgccaacatccccatcatcactgaactagtgaacgactccaacgttcagttcttggac
caagatgatgacgatgacccggacacagagctgtacctgacacagcccttcgcctgcgga
accgccttcgcggtcagcgtgctggactctctcatgagtgcaacatacttcaacgataat
atcctcaccctgatccggacgctggtgactgggggagccaccccagagctagaggctcta
ctggctgaggagaacgccctgcaagggggctacagcacgccacagacactggctaaccga
gacaggtgtcgtgttgcccaactggccctgtacgatgggccctttgccgacttgggggat
ggtggttgctatggagatttgttctgtaaagcattgaagacatacaacatgttgtgcttc
ggaatctacagattgagagacgctcaccttgccacacctagccagtgtaccaaacggtat
gtgatcaccaaccctccgtatgagtttgagttggtccccacagacctgatcttctgtctg
atgcagtttgaccacaacgcgggccagtctcggaccagcctttcccacagctctcactcc
tcccattcctccagcaaaaagagctcgtccgtccactccatcccaaccaccaaccggcag
aaccgcagcagcaaggctcgggaggctggtcacaaacagaatgcaacaaggatgaataga
atgagccaagaaaggaaatggtttacagatgaaccagaaaatgcctacccacggaacatt
cagatcaagcccaggagcactcacatggccaaccaagtcaaccaatacaaatccactagc
agtctgataccaccaatcagagaagttgaagatgaatgttga
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