Salvelinus namaycush (lake trout): 120018014
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Entry
120018014 CDS
T07522
Symbol
npas1
Name
(RefSeq) neuronal PAS domain-containing protein 1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120018014 (npas1)
Transcription factors [BR:
snh03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120018014 (npas1)
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GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
120018014
NCBI-ProteinID:
XP_038816894
UniProt:
A0A8U0THE6
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Position
Sna23:complement(38189274..38211187)
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AA seq
784 aa
AA seq
DB search
MATMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMCTFASQGDPPWCPLLEGENHCSKVRRSSHSLA
TDMFEQHLGAHLLQSLDGFVFVVSSEGRFLYISETVSIYLGLSQVELMGSSVFDYIHPAD
HVEMAERLGIRPHLRAEAGCHVAPESASSSASTSSLAGTPEPAPSSPLSPGNEPPDRGFF
IRMKSTLTKRGLHVKSSGYKVIHVTGQIRCRPAMVPGSARSVRRPMGLVALAHTLPPSTL
NEVRMESQMFVFRVNMDLQVTYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDNIRQSHE
DLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYVISRTELPDTPL
DLLQLPESLRAERLKASSSPSELSPQARGSPGPQPMKSSVCKGDPDSKLREIYNPGVQSG
DRRKRPLRSDSEGAPPETRRRLEEFRQREGSVSASSDLGSESEGEERAWEQGGDSARVKR
EEGPSKQGGETPVRGERGGRVHNGRAVIQHLKSVVSSPLSGPHNIKTEHEALAAGGRWTH
THTSSHTQPPPSHTHTPCGSLNGDSPPTPIPDSSSSSEAPPKGIFTPPSPAMSPPMSGSS
PLPCEERGMLSGGRGGGPDFELLQRLAAGGAAGRVLFHPLTLGPQGPQSLYAPSTIRYAP
PELPPSHPGAEGLRSDHHKGPPAFFPHLQRLAGLPSFSGFSASDNPFNPFCMNGLRGAAG
SEED
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccatgccgttcgtcagcgagggaaagtgtgtgagcgtggagtgggacttccta
cagggactactggccaaaccccccaccctgccctgtttgcagaacctgcggaaggagaag
tctcgtaatgccgctcgttcccgtcgcggcaaggagaactttgagttctttgagctggcc
aagatgctgcctctccccggggccatcaccagccagctggacaaggcctcggtcatccgt
ctcaccatcagctacttgcacatgtgcaccttcgccagccagggagacccgccctggtgc
cccctgctggagggagagaaccactgcagcaaagtgcgacgctcctcccactctctggcc
actgacatgtttgaacagcacctgggagcacacctgttacagtctctggacggctttgtg
tttgtggtaagctcggagggacgattcctctacatatcagagactgtttccatctacctg
ggcctctcacaggtggagttgatgggcagcagtgtgtttgactacatccacccagcggac
catgtggagatggctgagcgtctgggcatcaggccccacctgagggccgaggctggctgc
cacgtggcccctgagagcgcttccagctctgcctccacatcctccctggcagggacccct
gagcctgccccctcaagccctctctctccagggaacgaaccgcctgaccgaggcttcttc
atccgtatgaagtccaccctcaccaagagaggcctccacgtcaagtcctcgggctacaag
gtgatccatgtgactgggcaaatccgctgtcgccctgccatggtgccaggctccgcccgc
tcggtgcgtcggccaatgggcttggtggcccttgcgcacacgctccctccctccacgctg
aacgaggtgcgcatggagagccaaatgtttgtcttcagggtcaacatggacctgcaggtc
acctactgcgagaacaggatctcagagtacatggacctgagcccggcagaggtggtggga
cacacctgctaccacttcatccatgtagaagacctggataacatcagacagagccatgag
gacttgttgaggaagggtcaggtggtgaccgggtactaccgctggctccagaggagaggg
ggttatctgtgggtccagtcctgtgccaccgtctccatcaaccacaaagccccccacgaa
cgcaacgtcatctgggtcaactacgtcatcagtcgaacagagctcccagacactcccctg
gatctgctgcagctcccagagagtctgagggcggagcgtctgaaagccagctcctcccct
tcggaactctcgccacaagcccggggctccccaggtccacagccaatgaaaagctctgtg
tgtaaaggtgaccctgactctaaactgagagagatctataatcccggagtccagtcaggg
gacaggaggaagcgtccgctgcggtctgactctgaaggcgctcccccggaaacgcggcgt
cgcctggaagagttccgccagagagaggggagtgtgtccgcctcctcagacctgggcagt
gagagcgagggagaggagagagcgtgggagcaggggggagatagcgcgagggtcaaacga
gaggaggggccttcgaaacaaggtggggagaccccagtgaggggcgaaaggggtggcagg
gtgcacaacggtcgtgcggtaatccagcaccttaagagtgtagtgtcctcgcctctctct
ggtccccacaacatcaagactgaacatgaggcactggctgcagggggtcgctggacacac
acacacacctcttcacacacacaacccccaccctcgcacacacacaccccctgcggcagc
ctgaacggcgacagtcccccgacccctatcccagactcctcctccagcagtgaagcccca
cccaaaggtattttcaccccgccctcccccgccatgtctcctcccatgtccggctcctcc
cctctaccctgtgaggagcggggaatgttgtctggaggccgggggggcgggcctgacttt
gagctgttgcagagactggcagcggggggtgctgcaggacgggtgctcttccaccccctg
accctcggcccccaggggccacagagcctgtacgcccccagtaccatccgctatgcgccc
ccagagctgcccccctctcaccccggtgctgaggggctgcgctccgaccaccacaaggga
cctccagccttcttcccccacctccagaggctggccggcctgccctccttcagtgggttc
tctgcctcggacaatcccttcaaccccttctgtatgaacggactgaggggggccgcaggg
tccgaggaggactga
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