Salvelinus namaycush (lake trout): 120018025
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Entry
120018025 CDS
T07522
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120018025 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120018025 (dhx36)
03012 Translation factors [BR:
snh03012
]
120018025 (dhx36)
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120018025 (dhx36)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120018025 (dhx36)
Translation factors [BR:
snh03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120018025 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
NB-ARC
ATPase
NPHP3_N
AAA_16
DUF7428
Motif
Other DBs
NCBI-GeneID:
120018025
NCBI-ProteinID:
XP_038816907
UniProt:
A0A8U0P2R3
LinkDB
All DBs
Position
Sna23:complement(3292047..3365023)
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AA seq
1065 aa
AA seq
DB search
MSYGGYGGRGGRRGGRRGGRGFGRDGSRERWDRQAGSSGGGHPRSTESESREDRGERGGR
GGGPNRPPPHLKGREIGLWYAKWGGLKRKENERKSRAVVQMDESREQHITNLLNTVQRGP
TCPGPAREAHPSTSEHWRSAPSGPDRGSHCYFDGDEPSQDVLKIDLKQEKKEDEERPVQN
TPLTSQRYLPQDVLKAEPQEEREEKERRGKDKDLEYLFQEVVRENALDQQLKRDLERKKA
DSKYLDMLKFREKLPSFGKKEELVELIRSSQVLVVSGETGCGKTTQVTQFILDDYIERGM
GSVCRVVCTQPRRISAISVAERVAAERAESVGDGNSCGYQIRLQSRLPRKQGSVLYCTTG
IILQWLRSSPLLSTISHLVLDEIHERNLHSDVLLIIVKDLLRVRQDLKVILMSATLNAEK
FSKYFNNCPMIHIPGMTFPVQEFLLEDVLEMIRYRPQKKEQRPRWKRGFMQGQNSRPEKD
QKEAEYKESWPCYARTLRDKYSDRTIDVLEMMDDDDKIDLELIVQLIRHIVLSQEEGAIL
VFLPGWDNISGLNDLLMAQQMFKSDGFVIIPLHSLMPTVTQTSVFKRPPPGVRKIVIATN
IAETSITIDDVVFVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRRGRAGRVCPGKCY
HLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILKLGPIAEFLMKALDPPTEEAVTLAIT
HLMDLNALDRSEALTPLGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFF
IPMGKEKIADFRRRTLSRDSKSDHLTIIYAFTGWEEAKRRGYKFEREFCWDNFLSANTLQ
MLHSMKGQFAEHLLGAGFISTKNHKDPDSNINSENEKLIKAVIVAGLYPKVAMIKPSGSK
KRPVRVYTKTDGKVCIHPKSVNAEETQFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFF
GGDVTIQMDQDQETIAVDEWIVFQSPGRIAHLVKNLKKELDSLLEEKIRSPAPVDWSNRQ
SKDCAVITAIIDLITTQERPNVNARNTAPRGRHQYYNNDDGGDQY
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggaggttatgggggcagaggcggccgacgaggtggccgaagaggaggtcga
ggattcggacgggatggaagccgggagaggtgggaccgccaagctgggtcgagtggtggt
ggacacccgcggagcaccgaatcggagtcgagggaggaccggggagaacgaggagggaga
ggtgggggaccaaaccgtccacccccgcatctaaagggccgggagatcggactgtggtac
gccaaatggggaggcttgaagaggaaagaaaatgagagaaaatcgcgggcagtggttcag
atggatgagtccagggaacagcatatcactaatctgctgaacactgtccagagaggaccg
acatgcccgggcccagccagggaggcccacccctccacatctgagcactggcgttcagcc
ccgtcaggaccggacagaggcagccactgttacttcgatggtgatgagccctctcaggat
gtcctgaaaattgatctcaagcaagagaagaaggaggatgaggagaggccagtacagaac
actccactcacatcacaacgttacctcccacaggatgtccttaaagctgaaccccaagaa
gagagggaggagaaggagaggagagggaaggataaagacctggagtacttgtttcaggag
gtggtcagggagaatgccctggaccagcagttaaagagagatctagagaggaagaaggca
gactctaaatacctagacatgctgaaattcagggaaaagcttccatcctttggaaagaaa
gaggagttggtggagttgatcaggtccagccaggtgctggtggtcagtggagagacaggg
tgtggtaaaaccacccaggtgacccagttcatcctggatgactacatagagaggggcatg
ggttcagtctgcagggtggtctgcacccagccacgtcgcatcagtgccatatctgtagcg
gagcgggtggctgcggagagggctgagagtgtgggggacgggaactcatgtggttatcag
atccgcctgcagagtcggttaccacggaaacagggctcggtgctgtattgtacaacgggt
attattctacagtggctccgctcatcccctctgttgtccaccatcagccacctggttttg
gatgaaattcatgagaggaaccttcactctgatgttctgctcatcattgttaaagacctg
ctccgagtccgacaggacctcaaggtcatcctcatgagtgccacgctcaacgctgagaag
ttctccaaatactttaataactgtcctatgatccacatcccggggatgaccttcccagtg
caagagttcctactggaggatgtgttggagatgatcaggtatcgtccccagaagaaggag
cagaggcccaggtggaagagaggtttcatgcagggtcagaactccagaccggagaaggac
cagaaagaggccgagtacaaggagagctggccctgctacgcccgcacactacgagacaag
tactctgacagaaccatagatgtgttggagatgatggacgatgatgataagattgacctt
gagctcatcgtgcagctgatcagacatatcgtgctaagccaggaagaaggagccatcttg
gtgttcctgccaggttgggacaacatcagtggcctcaacgacctcctcatggctcagcag
atgttcaaatcagatgggtttgtgatcattcctctgcactccctgatgcctactgtcacc
cagacctcggtgttcaaaaggccccctccaggagtcaggaagattgtcattgccaccaat
atcgctgagaccagtattaccatagatgatgtggtgtttgtgatagacgggggaaagatt
aaggagactcactttgacactcagaacaacatcagcactatgactgcagagtgggtcagc
ctggccaacgccaaacagagaagaggacgcgccggcagggtgtgtccagggaagtgttac
cacctgtataatggcctgagggccagtcttctggatgcctaccagctacctgagatcatg
cgcacgccactggaggaactgtgtctacagatcaagatcctcaagctgggtccaatagca
gagttcctgatgaaagctctggaccctcccacagaggaggctgtcactctggccatcaca
cacctgatggacctcaatgctctggaccgctcagaggctctgaccccgttagggttccac
ctggccaggctgcctgtagagcctcacatcgggaagctgatcctgtttggagctctgctg
ggctgtctggaccctgtcctcactatcgccgcctctctcagcttcaaggaccccttcttc
ataccaatgggtaaggagaagattgcagactttaggagaagaactctgtccagagactca
aagagtgaccacctcaccatcatctatgccttcacaggctgggaggaagctaagcgacgc
ggctacaagtttgaacgagagttctgctgggacaacttcctgtcagccaatacactccag
atgctgcacagcatgaagggtcagtttgctgagcacctgctgggggctggcttcatcagc
accaagaaccacaaagaccctgactctaacatcaactcagagaatgagaagctgatcaag
gcagtgatagtggcaggtctctaccccaaagtggccatgatcaaacccagcggcagcaag
aagagaccggtgagggtgtatactaaaactgatgggaaggtgtgtattcaccccaagtca
gtgaatgctgaggagacccagtttaactacacatggctcatctatcacctcaagatgagg
accagcagtatcttcctgtacgactgtactgaggtgtctccgttctccctgctgttcttt
ggaggtgacgtcactatccagatggatcaggaccaggagaccatcgctgtggatgagtgg
atcgtcttccagtcccccggacgcatcgctcacctcgtcaagaatctgaagaaggagctg
gactctctattggaagagaagatccgaagccccgcccctgtggactggagcaaccgccaa
tccaaagactgtgctgtcatcacagccatcatagacctcatcaccacccaggagaggccc
aacgttaacgcgaggaacactgcccctagaggacgtcaccagtattacaacaacgatgat
ggtggtgaccagtactag
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