Salvelinus namaycush (lake trout): 120018143
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Entry
120018143 CDS
T07522
Name
(RefSeq) clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04142
Lysosome
snh04144
Endocytosis
snh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120018143
04142 Lysosome
120018143
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
120018143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120018143
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120018143
Membrane trafficking [BR:
snh04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
120018143
Exosome [BR:
snh04147
]
Exosomal proteins
Proteins found in most exosomes
120018143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
120018143
NCBI-ProteinID:
XP_038817088
UniProt:
A0A8U0P349
LinkDB
All DBs
Position
Sna23:19506196..19530190
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAIL
GNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENTFY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASVL
LESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
GQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGNEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAILTMMS
HPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFFM
KTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDLELAEELLAWFLEE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLDASESLR
KQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPTGYGQPPQPGFGYGM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaatactacctattcgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccttgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggttgtcatcattgatatggccgaccccaacact
cccatccgtagacccatctctgcagatagcgccatcatgaaccctgctagcaaagttatt
gccctcaaagcggcaaaaaccctccagattttcaacattgagatgaagagcaagatgaag
gctcacaccatgactgatgacgtcactttctggaagtggatctccctcaacactgtagca
ctggtcacagacaacgccgtctaccattggagcatggagggagactcccagccagtcaaa
gtctttgacagacactccagcctagcaggctgtcaaatcatcaactaccgcactgacgcc
aaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtgggagcc
atgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgccggc
ttcgcccagttcaaaatggagggtaacacagaggaatcgacactgttctgcttcgctgtc
cgagggcaagctggaggaaagttacacataattgaagtgggaaccccaccaacaggcaat
cagccatttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgacttc
cctgtagccatgcagatcagctctaagcaggatgttgtctttctcatcaccaaatatggc
tacatccacctgtatgacctggagactggcacctgtatctacatgaaccggatcagcggg
gagaccatctttgttacagccccacatgaaccaaccgctggcatcattggagtcaacagg
aaaggacaggtgttgtcagtgtgtgtggaggaggagaacatcatcccctacatcaccaac
gtgctccagaacccagacctggccctgcgcatggccgtgcgcaacaacctggccggggcc
gaggagctgttcgccagaaagttcaacaccctgttcgctgcagggaactactctgaggct
gccaaggtggccgccaacgctcccaagggtatcctgcgcaccccggacaccatccgtaag
ttccaaagtgtgccggcccagccgggccagacctctccactgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtccta
cagcagggacgcaagcagctgctggagaaatggctcaaagaggacaagctggagtgttca
gaggagctgggggacctggtgaagtcagtggaccccactctggccctcagcgtctacctc
agggccaacgtgcccaacaaggtcattcagtgcttcgctgagaccggacagttccagaaa
attgtcctctacgccaaaaaggtgggctacactccagactggatgttcctgctaaggaat
gtgatgaggatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggacgag
gagccactggccgacatcacacagatcgttgacgtgtttatggagtataacctgatccag
cagtgtacctctttcctcctggacgccctgaagaacaacaggcctgctgaggggcctctg
cagacacgcctgctggagatgaatctggtccacgctccacaggtggccgatgccatcctg
ggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaaggct
ggcctgctgcagagggctttggagcattacaccgacctgtacgatatcaaacgggctgtg
gtgcacacacacctgctcaaccctgagtggctggtgaacttctttggctccctgtcagtg
gaggactctctagagtgtcttcgggccatgctgtcggcaaacatccgtcagaacctgcag
atctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcaccgag
ctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccattgttaat
ttcagccaggacccagaggtccacttcaagtacatccaggcagcctgtaagacgggacag
atcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtcaag
aacttcctcaaggaagctaagctgactgaccagctccccctgatcatcgtgtgtgaccgc
tttgactttgtccacgacctggtcctctacctgtaccgcaacaccctgcagaaatacatt
gagatctacgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctgctg
gatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacagttc
tccactgatgaactagtggctgaggtggagaagaggaacagactgaagctgctcctgcct
tggctggaggcccgtatccatgagggctgtgaggagccagctacccacaatgccctggcc
aagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttctac
gacagccgcgtagtgggcaagtactgtgagaagagggacccccacctggcctgcgtggcc
tacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctgttc
aagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagcgtgctg
ctggagagtaacccgttcagaagacccctcatcgaccaggttgttcagacggccctgtct
gagacacaggacccagaggaggtgtccgtcacagtcaaggccttcatgactgcagacctc
cccaacgaactcattgagctgctggagaagatcgttctggataactcggtcttcagtgaa
cacagaaacctgcagaacctgctgatcctgacagccatcaaggcggaccgtacccgtgtg
atggagtacatcaaccgcctagacaactacgacgcccccgacatcgctaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaggaagtttgacgtcaacacctcc
gccgtgcaggttctgattgagcacattgggaacctggaccgggcctacgaatttgctgag
cgctgcaacgagcctccagtgtggagccagctggccaaggctcagctgcagaagggtctg
gtgaaggaagccatcgactcctacatcaaggctgatgacccctctgcctacatggaggtg
ggccaggctgcagcccagagtggtaactgggaggacctggtgaagttccttcagatggcc
cgtaagaagtcccgtgagtcttacgtggagacagagctcatcttcgccctggccaagacc
aaccgcctagctgaactggaggagttcatcaatggacccaacaacgcccacatccaacag
gtgggtgacaggtgttatgatgagaggatgtatgatgcggccaagctgctctacaacaac
gtgtccaacttcgggcggctagcgtccaccctggtccacctgggagagtaccaggccgcc
gtggacggagcccgcaaggccaacagcacccgcacctggaaagaggtgtgctttgcctgt
gtggatggaaacgagttccgcctggcacagatgtgtggcctgcacattgttgtccatgct
gatgaactggaggagctcatcaactactaccaggaccgtgcttactttgaggagctgatc
accatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgagctg
gccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttctgg
tccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcggag
ctggtcttcctctatgacaagtatgaagagtttgacaacgccatcctcaccatgatgagc
cacccctcagacgcctggaaggagggacagttcaaagacattgtcaccaaggtggccaat
gtggagttatactacaaggctatccagttctacctggagttcaaaccattgttactgaac
gacctgctcatagtgctgtcaccacgactcgaccacacccgcgcagtcaacttcttcatg
aagaccaagcagctgtcactggtcaagccgtacctgcggtcagtgcagaaccacaacaac
aagggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggccctg
cgtgcctccatcgatgcctacgacaactttgacaacatcaccctggcccagggcctggag
aagcatgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaaccgc
tggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcagtat
gcgtctgagtcgaaagacctggagctggctgaggagttgttggcctggttcctggaggag
gataagaaggagtgctttgccgcctgcctcttcacctgctacgacctgctgaggcctgac
gtagtgctggagacggcctggaggcacaacatcatggacttctccatgccctatttcatc
caggtcatgagggagtacctctccaaggtcgacaagcttgacgcctccgagtccctgagg
aaacaggaggagcagaacacagagtcccagcccattgtttatggcacgccccagctcatg
ctcacttcaggccctggtcaggctgtgcccccccagcctggctatggaggctacggctac
ccagcagcacccaccggctacggccagcctccccagcctggctttggctatggcatgtga
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integrated database retrieval system
