Salvelinus namaycush (lake trout): 120018169
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Entry
120018169 CDS
T07522
Name
(RefSeq) endothelial cell-selective adhesion molecule-like isoform X1
KO
K06787
endothelial cell adhesion molecule
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecule (CAM) interaction
snh04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
120018169
04517 IgSF CAM signaling
120018169
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120018169
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
CTX family
120018169
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GFIT
Motif
Pfam:
V-set
Ig_3
I-set
ig
Ig_2
Ig_CD22
TM_ErbB1
C2-set_2
Ig_4
Sp38
C2-set_3
Motif
Other DBs
NCBI-GeneID:
120018169
NCBI-ProteinID:
XP_038817144
UniProt:
A0A8U0P4F3
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Position
Sna23:20665875..20689924
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AA seq
551 aa
AA seq
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MIHLQLTVSGDWPAPCNSQRVEMPRREIEVVKGQMVVLQAWYSPTSDIGRNSVIWNFMAN
DSKQVISYSNGEPGIGSPEFRKRVGFSLSMPSSNLSIYINNTQESDSGRYLCNVIIPGAA
GLSGEMRLNVKVPPSPPVCTMTGSSVLNGNVTLSCKSSSGKPIPHYKWTKNAPMSEVFFS
PMQNERQGTLRLSNLTKSMSGKYVCRASNTAGSDTCSINLEVFTSSNSGAIAAATLGSIM
GLVAIILFLIFMLRRRDHEEEEIANDIKEDAQAPKRVSWAKSGTGSDIISKNGTLSSIAT
SPHPGDPQQLKNFPYPTAPASDTGSVLNAYRLRPGELNPLQGLPGYISGTLPPRHTRPLC
VANNIDATYPQGHSRPPSSNHISGTPPPGHTRLLSTSIIVDTPPHGFSQPPSFNHVGVTS
PHGYSRPHSSNNIGAPSPQGHSRPPSSNNIGAPSPHRHSQPPSSNHSRPPSISSMPHYGH
SRSSSSNGAPLHSPPGSHSPPGHKVTDPDKTEGAQPQVPRPLTSPISSATLARMGAVPVM
VPAQSQAGSLV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgatccatcttcagctgaccgtctcaggggactggccagcaccctgtaactcccagcgg
gtggagatgcccaggagagagatagaggtggtgaagggtcagatggtagtcctacaggcc
tggtacagccccacatctgatattggcaggaacagcgtcatctggaacttcatggccaac
gactccaagcaggtcatctcctacagtaatggtgagccagggataggtagtcctgagttc
aggaagcgtgttgggttcagcctgtccatgccctcgtccaatctctccatctacatcaac
aacacccaggagtcagactcaggacgatacctctgcaatgtcatcatccctggagccgcc
ggtctctctggagaaatgcgccttaatgtcaaagtccctccctcgcctccagtgtgcacg
atgactgggtcatctgtgctgaatggcaatgtgacactgagctgtaaatccagttcgggc
aaacccatccctcattacaaatggaccaagaatgcccccatgtcagaggtcttcttttcc
cccatgcagaatgagaggcaaggtaccctcaggttgagtaacctcactaagagcatgtca
gggaaatatgtgtgccgagctagcaacactgccggttctgacacttgctctatcaacctg
gaggtcttcacctcctctaattctggagcgattgctgctgctactctggggtccatcatg
ggactggtagccatcatactcttcctcatcttcatgctgaggaggagagaccacgaagag
gaggagatagccaatgatatcaaggaggatgcccaggcacccaagcgtgtttcctgggca
aagagtggcacaggctcagacatcatctccaaaaatggcacgctgtcatccatagccacg
agcccccatccgggagacccccagcagctcaaaaacttcccctaccccactgcaccggcc
tctgacacaggctctgtgctcaacgcctaccgccttcggcctggagagctcaaccccctg
cagggcctcccagggtacatcagtggcacacttccacccaggcacaccagacccctctgt
gttgctaacaacattgatgccacctatccacaagggcacagtcgaccccccagttctaac
cacatcagtgggactccaccccctggccacacccggctcctcagcactagtatcattgtt
gacactcctccccatgggttcagtcaaccacccagttttaaccatgttggtgtcacctct
ccacatgggtacagcagaccccatagttctaacaacattggtgccccctccccccagggg
cacagtcgacccccaagttctaacaatatcggcgccccctctccacacaggcacagccaa
cctcccagttccaaccacagccgaccccccagcatcagtagcatgcctcactatggacac
agcagatcctccagttctaacggtgccccacttcattccccacctggatcccattcccca
cctggccacaaggtcacagaccccgacaagactgagggggcccagccccaggtaccacgc
cctctcacctcgcccatcagctccgccaccctggcccgtatgggtgctgtgcccgtcatg
gtgcccgctcagagccaggctggatcactggtatag
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