Salvelinus namaycush (lake trout): 120018185
Help
Entry
120018185 CDS
T07522
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03030
DNA replication
snh03420
Nucleotide excision repair
snh03430
Mismatch repair
snh03440
Homologous recombination
snh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120018185
03420 Nucleotide excision repair
120018185
03430 Mismatch repair
120018185
03440 Homologous recombination
120018185
03460 Fanconi anemia pathway
120018185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120018185
03032 DNA replication proteins [BR:
snh03032
]
120018185
03400 DNA repair and recombination proteins [BR:
snh03400
]
120018185
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120018185
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120018185
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120018185
MMR (mismatch excision repair)
120018185
DSBR (double strand breaks repair)
HR (homologous recombination)
120018185
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
120018185
NCBI-ProteinID:
XP_038817170
UniProt:
A0A8U0P2N0
LinkDB
All DBs
Position
23:complement(22212226..22255252)
Genome browser
AA seq
605 aa
AA seq
DB search
MLTNGAIEALTKGSNDLQNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLSTQLN
PMVEDNRLAPNCICQLKRNVTNVLKDGRRVVIILDMEVVKSADKVAGKIGEPQPYVEGQS
KAPQSASNPSVHPLQPQNGIDGSMYKGPSREFGGKKGMPPSAMPSTPGGSAKVVPIASLN
PYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSIIET
GKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFVSIADLQAR
EKDTILDVIGVCKSVSDVTRLNTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAENFDGSG
QPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTEART
GGGGGGNTNWKTLADIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCNKKVVD
QQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKD
SNEAAFEEIFQQANFHTFVFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNIRK
MASAQ
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgacaaatggagcgatagaggccctaaccaaaggctctaatgatttacaaaacccc
atacttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcccgctttcgt
ctgatgatgagtgatggacagcactcaatgtcctcgttcatgctctccacccagctcaac
ccaatggttgaggacaaccgactggccccaaactgtatctgtcagctgaagaggaacgtg
accaatgtcttaaaggatggacggcgtgtggtgatcatactggacatggaggtggtgaag
tctgctgataaggtcgctggaaagatcggagagccccagccttacgtggaaggtcagagt
aaagccccacagtcagcctccaatccctcagtccaccccctgcaaccccagaatggaatt
gatggctccatgtacaaaggtcccagcagagagtttggggggaagaagggcatgcctccg
tctgccatgcccagcactcctgggggatccgccaaagtcgtgcccatcgccagcctcaac
ccctaccagtcaaagtggaccatccgagcccgtgtcaccaacaagagcggcatccgcacc
tggagcaactctcgtggtgacggcaagctgttctctatggagattgtggatgagagtgga
gagatcagagtgactgcctttacccaggaggtggacaaattctacagcatcatcgagact
ggcaaggtgttctacatctccaagggatccctgaagatcgccaacaagcagtactcatcc
ctgaagaatgactatgagatgaccctgaatggagagtccaccatcatcccctgtgaagac
acccaggacgtacccatggtgcagtgcaacttcgtctccatcgccgacctgcaggcccga
gaaaaggacaccattttggatgtgattggagtgtgcaagagcgtgtccgacgtgacccgc
ctcaacaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatggaccagtct
ggtaaactggtggaggtcaccctgtggggagaggaggcagagaactttgatggctctggg
cagcccatcctggccatcaaaggggccaagctgtcggactatgggggcagatctctatct
gcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatacaagctgcgg
ggctggtatgacaaggagggccactctatggatggccagtctctgacggaggcgaggaca
ggtggaggtggaggagggaacaccaactggaagaccctggctgacatcaagacggagcac
cttggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtacatccgt
aaggagaactgtctgtaccaggcgtgccctagtcaggactgcaataagaaggtggtggac
cagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaacttcaagtac
cgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacctgcttt
caggagagtgctgaagccatcttgggacagaacgctgcttacctagggcagctcaaggac
tcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttcgttttc
cgtaacagagtcaagctggagacctacaatgacgagtcccggatcaaggccacggtgatg
gaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatcaggaag
atggcttccgcccaataa
DBGET
integrated database retrieval system
