Salvelinus namaycush (lake trout): 120018228
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Entry
120018228 CDS
T07522
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog isoform X1
KO
K20299
vacuolar protein sorting-associated protein 53
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120018228
Membrane trafficking [BR:
snh04131
]
Protein recycling
Others
EARP complex
120018228
Endosome - Golgi transport
Tethering complex
GARP complex
120018228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps53_N
VPS53_C
Vps54_N
COG4_N
Syndetin_C
GrpE
FBF1
PsaD
NBD94
Sec8_N
Motif
Other DBs
NCBI-GeneID:
120018228
NCBI-ProteinID:
XP_038817233
UniProt:
A0A8U0TIV0
LinkDB
All DBs
Position
Sna23:24845015..24877823
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AA seq
831 aa
AA seq
DB search
MMMEEEELEFAEDLEAILHLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLA
NIDDVVNKIRLKIRCLDDNIRTVVRGQTNVGQDGRQALEEAQVAIGQLFGKIKDIKDKAE
KSEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRKRQYGEVANLLQ
GVVNVLEHFHKYMGIPQIRQLSERVKVAQSELGTQILADFEEAFPAQGSKRAGGPSNVLR
DACLVANVLDPRIKQEIIKKFIRQHLSEYMVLFQENQDVAWLDKIDRRYAWIKRQLVDYE
EKYGRMFPEEWCMTERIAVEFCHITRTELAKVMRTRAKEIEVKLLLFAIQRTTNFEGLLA
KRFSGCTLTDGPGVKKPETPLESTNPFLEDEIGEDGSEMEEDLDRPKKHKAPDNPFHGII
SKCFESHLYVYIESQDKNLGEMIDRFVSDFRAQGPPKVGTEDGGAVLPSCADLFVYYKKC
MVQCSQLSTGEPMIAFTTIFQKYLREYAWKILSGNLPKTSSNSGGLTIKSLLQEKEGSEA
AKFTVEELCLICSILSTAEYCLATTQQLEEKLKEKVDKTLVERINLTGEMDTFSNVISNS
IQLLVQDLDAACDPALTAMSKMPWQSVEHVGDQSPYVTSVIMHIKQNVPIIRDNLASTRK
YFTQFCIKFTNSFIPKFINHLFRCKTISMVGAEQLLLDTHSLKTVLLDLPSIGSQVVRKA
PASYTKIVVKGMTRAEMILKVVMAPHEPSVVFVDNYIKLLADGNPETFQKTLDMKGLKRS
EQSSMLELFRQRLPTPPSGTDGGPSLSFSTPTPEQENSRIRKLEKLIKKRL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggaggaggaagaattggaatttgcggaggatttggaggctattttgcacctt
actccagaggtgcagttggccatcgagcaggttttccccagtcaagacccattggacaga
gcagattttaatgctgtggaatacatcaatacattgtttcctactgagcagtcactggct
aatatagatgatgtggtcaacaagatccgtctgaagattcggtgtctggatgacaacatc
aggacggtggtgagaggccagaccaatgtgggccaggatggcagacaggcactggaggag
gctcaggtagccatcggccagctctttggcaaaatcaaagacattaaggacaaggctgag
aaatctgaacaaatggtcaaggagataacgcgggacatcaaacagctggaccatgctaag
cgtcacctgaccacctccatcaccaccctcaaccacctgcacatgctggccggtggcgtg
gactctctagaggcaatgacgaggaagaggcagtatggagaggtggctaacctgctacag
ggtgtagtcaacgtcctggagcacttccacaaatacatgggcatccctcaaatcagacag
ctctcagagagggtgaaagtggcccaaagcgagctggggactcagatcctggcagacttt
gaagaggccttccccgctcaggggtcaaagagagcaggggggcccagtaacgttctgagg
gatgcctgtctcgtggccaacgtcttggaccctcgcatcaaacaggagatcatcaagaag
ttcatcagacagcacctctctgagtacatggtgctcttccaggagaaccaggatgtagct
tggctggataagattgaccggcgctatgcctggattaagcgtcagctggtggactatgag
gagaagtacggacgcatgttccctgaagagtggtgtatgactgaacgcatcgctgtggag
ttctgccacatcaccaggacagagctggccaaagtgatgcggacgcgggccaaagagatc
gaggtcaagctgcttctgtttgccattcagaggaccaccaacttcgaggggctgctcgcc
aagcgcttctctgggtgcaccctcactgacgggcccggggtgaagaagccggagacacca
ctggagtccaccaaccctttcctggaggacgagattggagaggatgggtcagagatggag
gaggatctggataggcccaagaagcacaaggctcctgacaaccccttccatggcatcatt
tccaagtgcttcgagtctcacctctatgtctacatcgagtctcaggacaagaacctgggg
gagatgattgaccgttttgtgtcagacttccgggcgcagggcccccccaaggtgggcacg
gaggacggtggagcggtgctgcccagctgtgctgacctgtttgtctactataagaagtgc
atggtgcagtgctctcagctcagcacaggggaacctatgattgccttcaccaccatcttc
cagaagtacctcagagagtatgcctggaagatactgtctggaaacctgcccaagactagc
agtaacagtggaggactgaccatcaagagtctactgcaggagaaggagggttcggaggca
gctaagttcactgtagaggagctgtgtctcatctgtagcatcctcagtactgcagagtac
tgtctggccacaacacagcagttggaggagaagctgaaggagaaggtggataagaccctg
gtggagagaatcaacctgactggagagatggacaccttcagcaatgtgatctccaacagt
atccagttgcttgttcaggacctggatgctgcctgtgaccctgctctcactgccatgagc
aagatgccatggcagagcgtagagcatgtaggtgaccagagtccctatgtgacgtcagtc
atcatgcacatcaaacagaacgtccccatcatcagagataacctggcctccacacgaaaa
tacttcacccagttctgcatcaagttcaccaactctttcattcctaaattcatcaaccac
ttgttcaggtgtaagactatcagcatggtgggggctgaacagctcctcctggacacccac
tccctgaagacagtgttgttggatctgccctctatagggtctcaggtggtccgcaaggcc
ccagccagctacaccaagatagtcgtgaaggggatgacccgcgctgagatgatcctcaag
gtggtcatggccccccatgaaccctctgtggtgtttgtggataactacatcaagctcctt
gctgacgggaacccagagaccttccagaaaactctggatatgaaggggttgaagcgcagt
gagcagagcagcatgttggagctcttcagacagaggttacccactccaccctcagggacc
gacggaggcccctctctctccttcagcacccccacccccgagcaggagaactcgcgcata
cgcaaactggagaagctcatcaagaagagactctga
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