Salvelinus namaycush (lake trout): 120018236
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Entry
120018236 CDS
T07522
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120018236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120018236
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120018236
Complex C
U5 SnRNP specific factors
120018236
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120018236
NCBI-ProteinID:
XP_038817244
UniProt:
A0A8U0TJ29
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All DBs
Position
23:complement(25409718..25434199)
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGIHPPAQVPDYMSEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDAEEDSSVAEWLYEHQPLKDANKYVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPEDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETMEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
ATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPAWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYG
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccttcccttatagaggggtacctggtggaatgcccccaggtatccatccc
ccagcccaggttccagactacatgtctgaggaaaaactgcaagagaaagccagaaaatgg
cagcagttgcaggcgaagcgctactctgagaagaggaagtttgggtttgttgacgcccag
aaggaggacatgccacctgagcacgtccgtaagatcatcagggaccacggtgacatgacc
aacaggaagttccgtcacgacaagagggtatacctgggagccctgaagtacatgccccac
gcggtgctgaagctactggagaacatgcccatgccttgggagcagatcagagacgtgcct
gtcctataccacatcactggagccatctccttcgtcaacgagatcccctgggtcattgag
cctgtctacatcgcccagtggggcgccatgtggatcatgatgcgtcgtgagaagagggac
cgtcgtcacttcaagcgtatgcgtttccctccttttgacgatgaggaacctccgctggac
tacgctgataacatcctggacgtggagccgctggaggccatccagatggagctggatgca
gaagaggactcctccgtggcggagtggctctacgaacaccagcccctcaaggacgccaac
aagtatgtgaacgggaccacatacaggcgttggcagttcaccctgcccatgatgtccacg
ctgtaccgtctggccaaccagctgctgacagacctggtggactacaactatttctacctg
tttgacctgaaggccttcttcacctccaaggccctcaacatggccatccccgggggacct
aagtttgaacccctagttagggacatcaacctccaagatgaagactggaatgagttcaac
gacatcaacaagatcatcatcagacagcctatcaggacagagtacaagattgccttccca
tacctgtacaacaaccttccccaccacgttcacctcacctggtaccacactcccaatgtg
gtgttcatcaagactgaggatcctgatttgccagcgttttactttgaccccctgatcaac
cccatctcccacagacactcagtcaagagtcaggagcctctgccagaggatgacgaagag
tttgagcttccagagtacgtggagcccttcctgaaggagacgcccctctacacagacaac
acagccaatggaatcgctctgctctgggctccacgccccttcaacttgcgctctgggagg
accaggcgggccatcgacatcccactcatcaagaactggtatcgtgagcactgcccggcc
ggccagccagtgaaggtgcgtgtgtcttaccagaaactgctcaagtactacgtactcaac
gctctcaaacacagaccacccaaggcccagaagaagaggtacttgtttcgttcctttaaa
gccaccaagttcttccagtcgactaagctggactgggtggaggtgggcctgcaggtgtgc
agacagggctacaacatgctcaacctgctcatccaccgcaagaacctcaactacctgcac
ctggattacaacttcaacctcaagcctgtcaagaccctcaccacaaaggaacgtaagaag
tccaggttcgggaatgccttccatctgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccacgtgcagtacagactgggcaacgtggatgctttccagttgtcagacggg
ctgcagtacatctttgcacacgtgggccagctgactggcatgtaccgctacaagtacaag
ctgatgagacagatccggatgtgcaaggacctcaagcacctcatctactaccgcttcaat
actggtccagtgggtaagggtccaggctgtgggttctgggcaccaggatggagagtgtgg
ctgttctttatgaggggcatcacccccctgctggagagatggctgggcaacctgctggcc
aggcagtttgaaggtcgtcactccaagggcgtggcgaagactgtgacgaagcagcgtgtg
gagtcccactttgacctggagctgcgtgcggccgtgatgcacgatatcctggacatgatg
cctgagggcatcaagcagaacaaggccagaaccatcctgcagcacctctctgagtcctgg
cgctgctggaaggccaacatcccctggaaggtcccaggcctgcccacacccatcgagaac
atgatcctacgctacgtgaaggccaaagctgattggtggaccaacacggcccactacaac
cgcgagcgaatcaggcgcggcgcaaccgtggacaagactgtgtgcaaaaagaacctgggc
agactgacccgtctgtacctgaaggctgagcaggagaggcagcacaactacctgaaggat
ggtccatacatcacagcagaggaggctgtggccatctacaccaccacggtccactggctg
gagagcagacgcttctcccccatccccttccccccactgtcctacaaacatgacaccaaa
ctgctcatcctggccctggagaggctcaaagaggcctacagtgtgaagtccaggctgaac
cagtcccagagagaggagttggggctgatagagcaggcctatgacaaccctcacgaggcc
ctgtccagaatcaaacggcacctgctcacacagagagccttcaaagaggtgggcatagag
ttcatggacctgtacagtcacctggtgcctgtgtatgacgtggagcccctggagaagatc
acagatgcctacctggaccagtacctgtggtatgaggctgacaaacgacgtctcttcccc
ccctggatcaaaccagctgacacagagcctcctccactcctcgtctacaagtggtgccaa
ggcatcaacaacctgcaggatgtgtgggagacgatggagggagagtgtaacgtgatgcta
gagtctcgctatgaaaagatgtatgagaaaatagatctgacgctgctcaacagactgctg
cgtctcatcgtggaccacaacatcgctgactacatgactgccaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggtatcatccgtggtctgcagtttgcc
tcgttcatcgtgcagtactacggcctggtcatggacctgttggtgctgggcctccaccgg
gccagtgagatggctggaccccctcaaatgcccaacgacttcctgtccttccaggataca
gccacagagagtgcccaccccatccgcctctactgcagatacattgaccgtatacatatc
ttcttcaggttctcagctgatgaggcaagggacctgatccagaggtacctaacagagcac
cctgaccccaacaatgagaacattgtgggctacaacaacaagaagtgctggcccagagac
gccaggatgagactgatgaagcacgacgtcaacctgggtcgtgctgtgttctgggacatt
aagaaccgcctgcctcggtctgtaaccacggtccaatgggagaacagctttgtgtcagtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggcttcgagtgccgcatcctg
cccaagtgtcgcaccagctacgaggagttcacccacaaggacggagtctggaacctgcag
aacgaggtgaccaaagagcgtactgcccagtgtttcctgcgtgtggatgatgagtccatg
cagcggttccacaacagagtcagacagatcctcatggcctcaggatccaccaccttcacc
aagattgtgaacaagtggaacacggctctgatagggctgatgacgtacttccgtgaggcg
gtggtcaacacccaggagctgctggacctgctggtgaaatgtgagaacaagatccagacc
cgtatcaagatcggtctcaactccaagatgcccagtcgcttcccccctgtggtcttctac
acccccaaggagctgggagggctgggcatgctgtccatgggacacgtcctcatcccacag
tccgatctgaggtggtcgaagcagactgacgttggcatcactcatttccggtccggtatg
agccacgaggaggaccagctgattcctaacctgtaccgctacatccagccctgggagagt
gagttcatcgactcccagagagtctgggcagagtacgccctgaagagacaggaggctatc
gcacagaacaggcgtctgaccctggaggacttggaggactcttgggacagaggtatcccc
cgtatcaacaccctgttccagaaggacagacacacgctggcctacgacaagggctggagg
gtccgcactgacttcaaacagtaccaggttctgaagcagaacccgttctggtggacccac
cagcgtcacgacgggaagttgtggaaccttaacaactacaggacagacatgatccaggct
ctgggaggggtggagggcatcctggaacacacactcttcaaaggaacctacttccccacc
tgggagggtctcttctgggagaaggccagtggctttgaggagtccatgaagtggaagaag
ctgaccaacgcccagagatctggtttgaaccagatccccaaccgtcgcttcaccctctgg
tggtcccccaccatcaacagggccaacgtgtacgtgggtttccaggtccagctggatctg
accgggatcttcatgcacggaaagatccccaccctgaaaatctcactcatccagatcttc
agggctcacttgtggcagaagatccacgagagcgtcgtcatggatctctgtcaggtgttt
gaccaggagctggatgccctggagatcgagacagtgcagaaagagaccattcaccccagg
aagtcctacaagatgaactcttcctgcgccgacatactactcttcgcctcctacaagtgg
aacgtctcacgcccctcgctgctcgctgactcaaaggacgtgatggacagcaccaccacc
cagaagtactggattgacatacagcttcgctggggagactacgactctcacgacatcgag
cgctacgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cctaccggggtgctcatcgccatcgacctggcctacaacctccacagtgggtatggtaac
tggttcccgggaggcaagcccctgatccagcaggccatggctaagatcatgaaggccaac
cctgctctgtacgtcctgagggagcgcatccgtaagggtctgcaactctactcctcagag
cccactgagccctacctgtcctcccagaactacggagagctcttctccaatcagatcatc
tggtttgtggacgacactaacgtctatcgggtcaccatccacaagacgtttgagggtaac
ttgaccaccaagcccatcaacggagccatcttcatcttcaaccccaggacaggccagctc
ttcctcaagatcatccacacctctgtgtgggccggacagaaacgtctgggacagctggcg
aagtggaagacagctgaggaggtggctgctctgattcgttcccttcctgtggaggagcag
cccaaacagatcattgtcaccaggaagggcatgctggaccccctcgaggtccacttgctg
gatttccccaacattgtgatcaagggctctgagctgcagctgcccttccaggcctgtctg
aaggtggagaagtttggagacctaatcctgaaggccaccgagcctcagatggtcctgttc
aacctgtacgacgactggctcaagaccatctcctcctacaccgcgttctcccgtctcatt
ctgatcctaagggcgctccatgtgaacaacgaccgtgccaaggtgatcctgaagccggat
aagaccaccatcacagagcctcaccacatctggcccacgctgaccgacgaggagtggatc
aaggtggaggtgcagctcaaagacctcatcctggccgactatggaaagaagaacaatgtg
aacgtggcgtctctgacccagtctgagatccgtgacatcatcctgggcatggagatctct
gctccgtcccagcagcgccagcagattgctgagattgagaagcagaccaaggagcagtcc
cagctcactgccacgcagacacgcacagtcaacaaacacggagacgagatcatcacctca
acaacctcaaactacgagacacagaccttctcctccaagacagaatggagagtcagggcc
atctctgctgccaacctgcacctgaggaccaaccacatctacgtgtcgtctgatgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagacctgcgggcccagattgcaggttacctgtacggcaccagtccccctgacaacccc
caggtgaaggagatcaggtgtatcgtcatggtaccccagtggggaacgcatcagaccgtc
cacctacccaatcagctgccaggacacgagtacctcaaggagatggagcccctgggttgg
atccacacccagcccaacgagtctccccaactctccccccaggacgtcaccagccacgcc
aagatcatggctgacaaccccgcctgggatggagagaagaccatcatcatcacctgcagt
ttcactcccggctcctgcactctgacggcctacaagctgactcccagtgggtacgagtgg
ggcagacagaacacagacaagggcaacaaccccaagggctacctgccctcccactatgag
agggttcagatgcttctgtctgatcgcttcctgggcttcttcatggtgcctggacaggtc
tcctggaactacaacttcatgggtgttcgccacgaccccaacatgaagtatgacctgcag
ctgtccaaccccaaggagttctaccacgaggtccatcggccctctcacttcctcaacttc
gcctccctgcaggagggagagatctacaacgcagacagagaggacatgtacggttga
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integrated database retrieval system
