KEGG   Salvelinus namaycush (lake trout): 120018517
Entry
120018517         CDS       T07522                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9-like
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03020  RNA polymerase
snh03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    120018517
  09124 Replication and repair
   03420 Nucleotide excision repair
    120018517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:snh03021]
    120018517
   03400 DNA repair and recombination proteins [BR:snh03400]
    120018517
Transcription machinery [BR:snh03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     120018517
DNA repair and recombination proteins [BR:snh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      120018517
SSDB
Motif
Pfam: Zn_ribbon_RPB9 Zn_ribbon_TFIIS Ogr_Delta Zn_ribbon_recom Zn_ribbon_GRF_2 C1_1 DZR Zn_Ribbon_1 Zn_ribbon_NrdR Zn_ribbon_IS1595
Other DBs
NCBI-GeneID: 120018517
NCBI-ProteinID: XP_038817672
UniProt: A0A8U0P479
LinkDB
Position
Sna23:19429493..19444947
AA seq 202 aa
MVPDRSQAPHEVLPILADLHAFQGGHSHSGHRGQRMWCRRRGAAPTALSLRRPLRRAAGL
QGDAWMGCDGVHVGGVLTVETLWSVRGFVGIRFCQECNNMLYPKEDKENRILLYACRNCD
YQQEVDNICIYVNNISHSLSLLSQIIADVSQDPTLPQTEDHPCPKCGHKVAVFFQSHSMK
AEDAMRLYYVCAAPHCGHRWTE
NT seq 609 nt   +upstreamnt  +downstreamnt
atggtgcctgaccggtcacaagctccccacgaagtcctccccatcctggcagacctccac
gccttccaaggtggtcactcccatagtgggcatagggggcagaggatgtggtgcagacgg
aggggtgcagctcctacagcactctccctccgccggcccctcaggagagcagctggtctc
cagggcgacgcctggatgggctgtgatggggtccacgtgggaggggttctgacggtggag
actctgtggtcagtaagaggattcgttgggatccgattttgtcaagaatgcaacaacatg
ttgtatcccaaagaagacaaggagaatcgcatcctgctctatgcatgcaggaactgtgac
tatcaacaagaagtagacaacatctgcatatatgtcaataacatctcacactctctgtct
cttctctctcagatcattgcagatgtgtcccaggatccaacgctacctcagacagaggat
cacccctgccccaagtgcggccacaaggtggcagtgtttttccagtcacacagtatgaag
gctgaggatgccatgaggctgtactatgtctgcgcagcccctcactgtggacaccgctgg
acagagtga

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