Salvelinus namaycush (lake trout): 120018546
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Entry
120018546 CDS
T07522
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120018546
03036 Chromosome and associated proteins [BR:
snh03036
]
120018546
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
120018546
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
120018546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_3
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
120018546
NCBI-ProteinID:
XP_038817693
UniProt:
A0A8U0P2Z3
LinkDB
All DBs
Position
Sna23:complement(23170641..23212524)
Genome browser
AA seq
1741 aa
AA seq
DB search
MDFIEREAEESEEEFGSPEDTEKKALKHAAANDDEEEEEENTEDQDADGNLCGLIDDGVD
EGGGEEEDEEEGNKDKEGDSDSGEEIGHRKRKRSFDDRLDDDDIDLIEENLGVKVKRQKF
RRLRDMSDDEDEEGDEDVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEEEDDEES
DIDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEE
DADEESWDRPKKQAKKRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTRV
KPAEDDELEQEAEWIYRNAFSTLTISMQENADYLDRGPTTTFSRKGPSTIQKIKEALNFM
RNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFE
QISADPDKPLADGIRPLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSK
KKLKKIKVDEDGNEQEVEEEEEEEEEQSKGPDLKLASRRDMYSICQCAGLDGLAKKFGLT
PEQFGENLRDSYQRHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLV
RHVLRQTFQERAKINIKPTKKGKKDVDEAHYGYSFKYLKNKPVKELNGDQFLKMFQAEEE
GLLTINICIDLIGVKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLY
PQMAKELKNKLIAEAKENIIKACSRKLYNWLKVAPYRPDQQVEEEDEELMSEAHGKGIRV
LGVAFSSSRDTPVFCALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLN
SKKPHIIAIAGENRDAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEA
DFRDYPPLLRQAVSVARKIQDPLVEYAQVCSSDEDILCLKLHPLQEHVVKEDLLNALYCE
FINRVNEVGVDVNRAMAHPYTQSLVQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMC
HMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAE
DANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTY
RGPNTEEIFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFC
QQDNFPELSEVWNHFDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGM
TVHCRIMKIDIEKLSVDLTCRTSDLSDKNNEWKLPKDTYYDFDTETEDVKQEDEAKKKQQ
RTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADGIYQHI
DVREEGKENAFSLGHTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRK
KMEEVLVKSKKEKPTFIPYYVSACRELPGKFLLGYQPRGKPRVEFVTVTPEGFRYRGQIF
PTVNGLFRWFKDHFQEPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTS
QMFSAIAAVTGQGQNPNTTPAGWASSQYGYTGGSSGGGGSSSAYHVFATPAQQPIATPLL
TPSYSYTTPTPSQQQTITTPQYPSSTPQSSHGSHGHGHRPSSSTPSSTSSSRHHRTPTPK
ATSHTAVDWGKMAEQWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMD
R
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagggaagcagaggagtctgaggaggaatttgggagtccagaggac
acagagaaaaaggcactgaagcatgctgcagcaaatgatgatgaggaggaggaagaggag
aatactgaggatcaagatgcagatggaaacctctgtggtctgattgatgatggtgtggat
gaagggggaggggaggaagaggatgaggaagaagggaataaagataaagaaggtgatagt
gactctggggaggaaattggacaccgtaagaggaagagaagctttgacgaccgcttggat
gatgatgatattgatctcattgaggagaatttgggagtaaaagtgaaaaggcaaaagttc
cgtcgtttgcgagacatgtcggatgatgaggatgaggagggagatgaagatgtcagggag
gcccatgagaaggacatgatagcggatgagatcttcatggggacaggagcggatgagggt
gaggcattggatgtgcctttgcatcccggggaggatgaggaggaggacgatgaggagtct
gatatcgatgactttattgtggatgatgacggacagcccttgaaaaaacccaagtggagg
aagaagctgccaggatatacagatgcagcccttcaggaggcccaagagatatttggaggg
gactttgactttgccgagtttgacactgaagcctatgaagatgcagaggaggaggaggag
gatgcagatgaagagtcatgggaccggcccaagaagcaggccaagaagagggtgggtcga
cgcagtatctttgagatctatgagcctagcgagctggagagcagtcacatgacggaccag
gacaacgagatccgctccactgacatgccagagaggttccagttgcgctccactcgtgtg
aagccagcagaggatgatgagctggaacaggaggctgagtggatctataggaatgccttc
tctactctcaccatctccatgcaggagaacgcagactatttggacagaggtccaaccact
actttcagcagaaaaggccccagcaccatacagaagattaaagaggctttgaatttcatg
agaaaccaacactttgaggttccgtttatagcgttctacaggaaagagtatgtggagcct
gaactcaatatcaatgatctgtggaaggtttggcagtgggatgagaagtggacccagctg
aaaacccgcaaacagaacctgagacgcctgttccagaagatgcagggataccagtttgaa
cagatctcagctgacccagataagccactggctgatggcattcgaccactagacacttca
gatttagagaggctgaaggatgtccagtctagtgatgaactgggcgacgtctacaaccat
ttcctgctgtactatggccgggatattccaaagatgcagaatgcagccaggtccagcaag
aaaaagctgaagaagatcaaagtggatgaagatggtaatgagcaggaagtagaggaggag
gaagaggaagaagaggagcagtcaaaagggccggacctgaagcttgcatctcgcagggat
atgtacagcatctgccagtgtgcaggactggatggcctggccaagaagtttggtctgact
ccagagcagtttggagaaaacctacgtgacagttaccagcgtcacgagacggagcagttt
cctgctgagcccatggagctggctaaggactacatttgcagccagttcagcacagcggag
gcagtactggaggggactcgctacatggttgccatgcagatcgcccgggagcctctagtc
agacatgtgctccgacagacgttccaggaaagagccaagatcaacatcaaacccaccaag
aagggaaagaaggatgtggatgaggcccattatggttactcctttaagtatctgaaaaac
aagcctgtaaaggagctgaatggtgaccagttcctcaagatgttccaggcagaggaagag
ggcctgctcaccataaacatctgtattgacctaattggagtgaaggggtacggaggtgac
caggcatactatgaagagataaagcagttttactacagagatgagttcagccaccaggtt
caggagtggaacagacagcgcactctggccattgaacgatccctcaaacagttcctttac
ccgcagatggcgaaagagctgaagaacaaacttattgcagaagcaaaggagaacatcatc
aaggcctgcagcaggaagctgtataactggctgaaggtggcgccctatcggcccgaccaa
caagtggaggaggaagatgaggagctcatgtctgaggcccacggcaaagggatccgcgtg
ctgggagtggccttctcatccagcagagacaccccagtgttctgtgccctggtgaacggt
gacggagaggtgggggatttcctcaggcttccttacttcctgaagaggaggaacgcatgg
agggaggatgaaagggagaaaaagatccacgatattgaaaccctgaagaagtttctgaac
agcaagaagcctcacatcatcgctatagctggggagaacagggacgcccagatggtgatt
gaggacattaaacgcactgccagtgagctggagcaggagtcctccttccccaccatcggg
gtggagctggttgacaatgaactggccatgctctacatgaacagcaagaagtcagaggca
gatttccgggactacccccctctcctgagacaggctgtgtctgtggccaggaagatccag
gaccccctggtggagtatgctcaggtgtgcagcagtgacgaagacatcctctgcctcaag
ttacaccctttgcaggagcatgtagtgaaggaggacctgctgaatgctctgtactgtgag
ttcatcaaccgggtgaatgaagtgggtgtggatgtgaaccgggccatggcccacccctac
acccagagcctggtgcagtacgtctgtggcctggggcccaggaagggatcccacctgctc
aggatcctgaagcaaaataacactcgtctggaaaaccgcactcaactggtcaccatgtgt
cacatgggccccaaggtcttcatcaactgtgctggtttcatcaagattgacacagcttca
cttggagacagtactgactcctatattgaggttctggacggatcgcgggtgcacccagag
acctacgagtgggccaggaagatggccgtggatgccctggagtacgatgagtcagcggag
gacgccaacccggccggagcactggaggagatcctggaaaacccggagcggctcaaagac
ctagacttggacgcctttgctgaggagctggaaagacagggctatggtaacaagggcatc
accctgtatgacatccgtgctgagctgagctgcaggtacaaagacctgaggtccacctac
agaggacctaacacagaggagatcttcaacctgctcaccaaggagacaccagagaccttt
tacatcggtaaactgatcaccagtgtggtgacaggcattgctcaccgccgcccccagggt
gagagttatgaccaggccataaggaatgatgagacaggtctgtggcagtgtcctttctgt
cagcaggataacttccctgagctcagcgaggtgtggaatcattttgacagtggctcctgc
cctggccaagctattggggtccgctgtcgcatggacaacggagtcaccggctttatccca
accaagttcctcagtgacaaagtggtcaagcaccctgaagaaagggttaaggtgggcatg
acagtgcactgcaggatcatgaagattgacattgagaagctcagtgtggatctgacctgt
cggacgtcagacctgtcggataagaacaatgagtggaagcttcccaaggacacctactac
gactttgacactgagacagaggatgtgaagcaggaggacgaggccaagaagaaacagcag
agaacaacctacatcaagagggtgatagcccacccatcgttccataacatcaacttcaag
caggcagagaagatgatggagtccatggaccagggagatgtgatcatcaggcccagcagt
aagggagagaaccacctgactgttacttggaaggttgctgatggcatctaccagcacatt
gacgtacgagaggagggcaaggagaacgccttcagcctgggacataccctgtggatcaac
actgaggaatttgaagatctggatgaaatcacagccagatacgttcaaccaatggctgcg
tttgctcgcgatctacttggtcacaagtattttcaagaatgcaatggtggagaccgaaag
aaaatggaggaggtcttggtgaaaagcaagaaggaaaagcctacattcatcccctactat
gtgtctgcctgtagagagctgccagggaagtttctgctcggttaccagccccgcggaaaa
ccaagggttgagtttgtgactgtcacgcctgaggggttcagatacagaggccagattttt
cccacagtcaatggactcttccgctggttcaaagaccatttccaagagccagtggcaggg
attactcccagcagtagcagtagaacacgaaccccagcctctgtcaatgccacgccagcc
aatattaacattgcagatctgactcgtgcagtgaacgccctccctcagaacatgacctct
cagatgttcagtgccattgccgcggtaacgggccagggccagaaccccaacaccacacct
gccggatgggcatccagccagtacggctatactggtggcagcagcggcggaggggggagc
agcagcgcctatcatgtgtttgccacaccagctcagcagcccattgctactccccttctg
acgcccagctattcatacaccacccccacccccagccagcagcagactatcaccacgccc
cagtaccccagcagcactccccagtcctcacacggatcacacggacatggacaccgccct
tcctcctccacaccatcatcaacatcctcctcccgccaccacaggacaccaacaccaaag
gcaacttcccacacagcggtggactggggaaagatggccgagcagtggctccaggagaaa
gaggcagagcgcaaaaagacgaggcccagaatgaccccacgaccttctcccagccccatg
atcgagagcactcccatgtccctcgctggagacgccacaccactgctggatgagatggat
cgctag
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integrated database retrieval system
