Salvelinus namaycush (lake trout): 120018684
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Entry
120018684 CDS
T07522
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04270
Vascular smooth muscle contraction
snh04625
C-type lectin receptor signaling pathway
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
120018684
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
120018684
09153 Circulatory system
04270 Vascular smooth muscle contraction
120018684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120018684
Membrane trafficking [BR:
snh04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
120018684
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
NTS
PH
Motif
Other DBs
NCBI-GeneID:
120018684
NCBI-ProteinID:
XP_038817813
UniProt:
A0A8U0P374
LinkDB
All DBs
Position
23:complement(40309521..40346108)
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AA seq
1483 aa
AA seq
DB search
MPGVLIVSGNLSLLSALVLGLVRFPNKANRSSSILSKDHPPDKKPKSDKPAVSCSHEFDP
TDVLVQKSGCVLVEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERA
GVQTGDRIIKVNGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSESEAKLGFP
GPQAGSSPVTSPNAPGQPTGERPYSPHDRITSPLWEENNSVHSQKVDILQKMLSKEQQDL
QAMKEEYSRNPTPKLLKDIQEAKKHIPQLQGQLSKATGGAQDALQLGDGDDGSMVDMDHT
PSSRGDSSNDLSWSSSTMSPVLRSFAPASPESLCQRDMLSYHSPKSTPRDSFNSCHSPDP
EDTPDLDSLSPSAVISPSSRFVSQIIGAEDDCFDSDQEQVNGQCSCFQSMELLKSRPAHL
AAFLHHVVSQFDPAPLLCYLFADLCKQTNSKETRRVFMDFHNFFIDRGANLKVAVPESIS
LDLDRRRTELIPEELNRQLVQMMQDTLLPDIQRNLEDFRQKRSMGLTLAEGELARLDTER
VRDRVALERERSCAENIITKIEDVLLTTQSTEEEKCTTMQYVILAYMKHLGVKVKEPRGL
ESKRVRLNFLPKIKKSVKTEKEGGEEKVKRTRFPSILGPQRRPSRVDPTSIGKAMDLNKP
RPQKQLSQPCLGAVEHLEAGRLTASQSSEGSELTHSSNTNATSPTNSTTNSHASDGGSRD
SEFVLTPNSAFLKLSEGLGDLDSLQYTPNTHFDYSLSPYSLDQLQEEDRESRILEGTPKS
IRRLDGLVSTEVQSEDDQGGTDSEHDPLNWQQLVGREVLAGLRAHEIKRQEVINELFYTE
RAHLRMLKVLDNIFYQKLTREAILPPADIKNIFTNLGDIVQLHVLISEQMAAIRKRSETS
VIDQIGDDLLSWFSGGEEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNR
LCRRLQLKDIIPVEMQRLTKYPLLLENIAKYTDDTVEKDKVKKAGDCCRKILNHVNQAVK
ESENKQRLEDYQRRLDLSSLKQTENPMITELKNLDLTKKKMVHEGPLSWKVNKDKTIELY
TLLLEDILVLLQKQDERLVLKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFV
LSMSDNGAQIYELMAQTVSEQRMWQRQITQRADAMKVNPHSGIHLPQTDGERDGVEIIAA
DVARLSKDPDRISSGSSQSIDKECSAASGGVMQTSLPDANPFVGLKPEEEEPSREEGPYG
DPDFADRLPFRMAVDGISESDGLGFSPSRADDALKTLSALKQVLVTQLMLQEDGEGAGRS
SSRGGRLLRTTSLRTPVDSRARVAVQKGSGMCTQASHPEDPAQDLVSGDTGFFESPEDYA
GYLVLEGYGGSGESSTDDDLQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQV
LSHLRNLQTNLNHLKEVEAKYHSLLRQRPARSSTDTDINKDKR
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atgccaggagtgctcattgtttctgggaatctgtccctgctttcagccttggtgctgggg
ctggtgaggtttcccaataaagcaaacagaagcagtagcattctcagtaaagaccacccc
cctgacaagaaacccaaaagtgataaaccggcagtctcctgttcacatgagtttgaccct
acagacgttctggtgcagaagagtggctgtgttctagtggaggggaagcccgagtcctgt
gggcttgtccagcgatgtgtgatcattcagaaagatgagaatggctttgggctgacggtg
agcggagacaacccagtgtttgtgcagctcgtcaaggaagatggcgctgcggagcgtgcg
ggtgtacagacaggtgaccggatcatcaaggtgaacgggaccctagtaacacattcaaac
cacgtggaagtagtaaagctcatcaaatcgggctcctatgtggccctcacggtgttgggg
cgaccccctgggttgccccagatccccctgtcggagagcgaggctaagctggggttcccg
gggccccaggctgggtcgtcccccgtcacctctccaaacgctcctggacagccaacgggg
gagcgcccatacagcccccatgaccgcatcacctctcctctatgggaagagaacaacagc
gtacacagccaaaaggtggacatcctgcagaagatgttgtccaaggagcaacaagatttg
caggcaatgaaggaggagtacagcaggaatccgacgccaaaactactgaaggacatccag
gaagccaagaagcacattccacagctgcaggggcagctcagtaaggccactggaggagca
caggatgccctgcaattgggtgacggagatgacggtagcatggtggacatggaccacaca
ccttcctccaggggggacagtagcaatgacctctcgtggagcagcagtaccatgtcccct
gttctccgcagttttgcacctgcctccccggagagcctgtgccaaagagacatgttgtcc
taccacagcccaaagagcacgccccgagacagcttcaactcctgccactcccccgaccca
gaagacactccagacctggactcgctgtccccctctgctgttatcagcccttcctcacgc
tttgtctcccagatcatcggagctgaggacgactgctttgactctgatcaagaacaggtc
aatggccagtgcagctgtttccagagcatggagctgctcaagtccagacctgcccacctg
gcagcgttcctgcatcacgtcgtctcgcagtttgaccctgcaccgctgctctgctacctc
ttcgctgacctgtgcaagcaaactaactccaaagaaaccagacgagtgttcatggacttc
cacaacttcttcatcgaccggggagctaatttaaaagtagctgttcccgagtccatctcc
cttgaccttgaccggcggaggacggagctgatccctgaggagctgaaccgacagttagtc
cagatgatgcaggacaccctgctccctgacatccagaggaacctggaggacttcaggcag
aagcgcagtatgggcctaaccctggcggagggggaactggcccggctggacacggagcgc
gtcagagaccgggtagcactggagagagaacgctcctgtgctgaaaacatcatcaccaag
atagaggatgtcctgttgacaacccaatccacagaggaggagaaatgcactactatgcag
tatgtcatcctcgcgtacatgaagcaccttggagtgaaagtcaaagagccacggggccta
gagtccaaaagggtccgccttaacttcctccccaagatcaagaagagcgtcaagaccgag
aaggagggaggggaggagaaggtaaaacgaaccaggtttcccagcatcctcgggcctcag
cgccggcccagccgcgtcgaccccacgtccatcggcaaggccatggacctcaacaagccg
cggccccagaagcagctgtcccagccctgcctgggggccgtggagcacctggaggcgggt
cgcctgacggccagtcaatccagcgagggctcagagctcacacattcctccaataccaac
gccacctcgccaaccaacagcaccaccaacagccacgcctctgacggaggcagcagagac
tctgagtttgttctgacccctaactctgccttcctcaaactgagcgagggtcttggagac
ctggacagtctacagtacactccaaacacacactttgactacagcctgagcccatatagc
ctggaccagctgcaggaggaggacagggagagcagaatccttgaaggaacacccaagtct
atcagaaggttggatggccttgtttctacggaggtgcagagtgaagacgaccaaggaggc
acggactctgagcacgaccccctcaactggcagcagctggtgggacgtgaggtcctggct
ggactcagggcccacgagatcaagagacaggaagtcattaacgagctgttctacactgag
agggcccacctgcggatgctcaaagtgctggacaacatcttctaccagaagctcaccaga
gaggccatcctgcctcctgccgacatcaagaacatcttcaccaacctgggggacattgtt
caactgcatgttttgatatctgagcaaatggcagcaatccggaaaaggagcgagacgtcc
gtaatcgaccaaataggagacgacttgctgtcctggttcagcgggggcgaggaggagaag
atcaagcaggcggtgggcacgttctgcagcaaccagcccttcgctctggagctcatcaag
agcaggcagaagaaggactcgcgcttcacctccttcatgcaggaggctgagagtaaccga
ctgtgtcgaagactccaactgaaggacatcattcctgtggagatgcagaggctcaccaag
taccctctcctactggagaacatcgccaagtacacagatgacaccgtggagaaagacaag
gtaaagaaggcaggcgactgctgcaggaagattcttaaccacgtcaaccaagcggtgaag
gagtctgaaaacaaacaaaggctggaggactaccagaggcggctagacctctcgtctctg
aagcagacggagaaccccatgattacagagctcaagaacttggacctgaccaagaagaag
atggtccacgagggaccactgtcatggaaggtcaacaaggacaagactattgagctgtac
accctgctcctggaggacatcctggtgctgctgcagaagcaggacgagcggctcgtcctc
aagtgccacagcaaaaacctgtcgggcaccgccgacaccaagcacatcttcagccccatc
atcaagctcaatgcggtgctggtgcgctctgtggccacagacaacaagtcgttctttgtt
ctctcaatgtcggacaacggggcacagatctacgagctgatggcccagaccgtatcagag
cagagaatgtggcagcggcagatcacccagagagcggacgccatgaaagtgaatccacac
agcggcatccacttacctcaaacagatggagagcgagacggtgtggagatcatcgctgca
gacgtagcccgactcagtaaggacccggaccgcatctcctctggaagtagccagtctata
gataaagagtgcagcgctgcctctggtggcgtgatgcagacctctctcccagatgccaac
ccctttgtaggactcaagcccgaagaggaggagcccagccgggaggaggggccttacggg
gacccggactttgcagataggctgcccttccgcatggccgtagatgggatcagcgaatcg
gacgggctaggcttcagtccttctagggctgacgatgccttaaagacattgtcggcgctg
aagcaggtcctggtgacccagctcatgttgcaggaggacggcgaaggcgccgggcgctcc
tcctcgaggggcgggcgtcttctcaggaccacgtccctgaggacccccgtggacagccgt
gcccgggtggctgtgcagaaaggctccgggatgtgcacccaggccagccaccctgaggac
cctgctcaggacctggtgtctggggacacgggtttctttgagtcccccgaggattatgca
gggtacctggtcctggagggctacgggggctcgggggagagcagcacggacgatgacctc
caggccaccgggaagcagctgagcgcctcacggggctgcggggcaggagactctgggatc
agcctgaggttctcctctgcctcacaggcaggtagcatctccagcttcagccgacaggtc
ctgtcccacctccgcaacctgcagaccaacctcaaccacctcaaggaggtagaggccaag
tatcacagtctactacgccagaggccggccaggtcatcgacagacacggacatcaacaaa
gataaaagatag
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