Salvelinus namaycush (lake trout): 120018787
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Entry
120018787 CDS
T07522
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
snh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120018787
09124 Replication and repair
03420 Nucleotide excision repair
120018787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120018787
03036 Chromosome and associated proteins [BR:
snh03036
]
120018787
03400 DNA repair and recombination proteins [BR:
snh03400
]
120018787
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120018787
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
120018787
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120018787
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
120018787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
AAA_11
Motif
Other DBs
NCBI-GeneID:
120018787
NCBI-ProteinID:
XP_038817926
UniProt:
A0A8U0P4U0
LinkDB
All DBs
Position
Sna23:complement(31483092..31490449)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
REYPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYSKETGEKNNILALALSSRKNLCVHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDL
KDFGRRKGWCPYYLARYSILHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVEGLKEANVARE
TDIYMSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD
IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLISNFATLVSTYSKGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFERFQSVIITSGTLSPLDIYPRILDFRPVTVAS
FTMTLARTCLCPLVVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYTYMENIVASWYEQGILENVQRNKLIFIETPDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLQSEDMLQKIAQIAHQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgaagggttgttagtctatttcccatatgactacatttacccagag
caatattcctacatgctggaactcaagaggaccctggatgccaagggacatggagttctg
gagatgccatcgggaaccgggaaaaccatctctcttctgtcattgattgttgcatatcag
cgggagtatccccttgaagtcacaaagctgatctactgttcccgaactgttcctgagata
gagaaggtggtggaggagttgaggaagttaatggagttctattctaaggagacgggagag
aagaacaacatcctggctctggcgctctcctctcggaaaaacctgtgtgttcaccccgag
gtgagctccttacgctttgggaaagaggtggatgggaaatgtcacagcctgacggcgtca
tacatccgcgcccaacggcacagcaacccaagcctgccttcctgccgtttctatgaggag
tttgatgctatgggaaagcaggtgcctctccccgctggagtctacaatctggacgatctg
aaggactttgggcggaggaaaggctggtgcccctactacctagcacgctattcgatcctc
catgccaacatcatagtttacagttaccactacctcctggacccaaaaattgcagacctt
gtctcaaaggagctctccaagaaatcagtggttgtttttgacgaagcacataacatcgac
aatgtgtgcatcgactcaatgagcgtcaacatcaccaggaggactctggaccgcagtcag
gccaacgtggagaccctacagaacaccattctcaagataaaggagacagatgcagccaaa
ctgaaagaggaatacagacgattggtggagggcctgaaagaggccaacgttgccagggag
accgacatctacatgtccaatcccgtgttgccagatgagatcctccaagaggctgtgcct
ggcagcatccgcacggcagagcactttgtgggcttcatgaagcgtttccttgagtacctg
aaggccaggctgaggattcaccatgtggtgcaggagagcgctccacagttcctcaaagac
atcttcgagaaggtctgcattgaccgcaagccactcagattctgtgccgagaggttgcgt
tcgctgctgaggactttagagatagcggacatcgcagacttctcagccatcaccctcatc
tccaactttgccactctggtcagcacttacagcaaaggcttcaccatcatcattgaaccc
tttgaagacagaacccccaccattgctaaccccgtcctgcacttcagctgtatggaccct
tccattgccatcaagcctgtgttcgagcgcttccagtctgtcatcattacgtcagggacc
ctttcaccgttggacatttacccccgaatcctggacttccggcctgttaccgtggcatcc
ttcaccatgacgctggcacgcacctgcctctgccctcttgtggtggggagggggaacgac
caggtggccatgacctccaagtttgagacgcgtgaagattttgctgtcatccgtaactat
ggcaacctgctgctggagatgtctgcgattgtgccagatggcatcgtggccttctttacc
agctacacctacatggagaacattgtggcgtcgtggtatgagcagggcatcttggagaac
gtccagaggaacaagctgatcttcatcgagaccccagacgcagcagagaccagcatggct
ctggagaaataccaggaggcctgtgagaacggcagaggagccatcctgctgtctgtggcc
agggggaaggtgtccgagggaatcgactttgtccaccattttggccgtgcggtgatcatg
ttcggagtgccttacgtttacacacagagccggatcctgaaggctcgtctggagtacctg
cgggaccagttccagattagagagaatgacttcctgacgtttgacgccatgcggcacgca
gcgcaatgtgtgggccgcgccatcaggggcaaaactgactatggcttgatgatcttcgca
gacaagcgctatgcccgggctgacaagcgagggaagctgccccggtggattcaggagcac
cttactgacggcagcctcaacctgaccatcgacgagacggtacagctgtccaaacacttc
ctacgccagatggcccagcccttcagacaggaggaccagttgggcctgtctctgctgaca
ctggagcagctgcagtcagaggacatgctgcaaaagatcgcccagatcgctcaccaggcc
taa
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integrated database retrieval system
