Salvelinus namaycush (lake trout): 120018963
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Entry
120018963 CDS
T07522
Name
(RefSeq) coatomer subunit beta'
KO
K17302
coatomer subunit beta'
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120018963
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120018963
Membrane trafficking [BR:
snh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120018963
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120018963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
PEP5_VPS11_N
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_LRRK2
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
120018963
NCBI-ProteinID:
XP_038818101
UniProt:
A0A8U0TJN1
LinkDB
All DBs
Position
Sna23:11186919..11203610
Genome browser
AA seq
837 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMVASLYNGSVCVWNHETQTLVKTFEVCDLPV
RVAKFVARKHWVIAGADDMHIHVFNYNTLERAHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWDKKWVCGQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSAPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHTQNVSCVSFHPE
LPIILTGSEDGTVRVWHSSTYRLENTLNYGMERVWCVCGQRGTNSVALGYDEGSIIIKLG
REEPAMSMDSNGKIMWAKHSEVQQANLKAMGEAEIQDGERLSLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWGHDSSEYATRESTSMVKIFKNFKE
NKSFKPDFGAEGIHGGFLLGVRSVSGLAFYDWENTELVRRIEILPKHVFWSESGELVCIA
TEESFFVLRYLAEKVATAQETKEGVTEDGIEDAFEVLGEIQEVVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTVAHLDKTMYLLGYIPKDDRLYLGDKELNIVTYSLLVSVLEYQTAVMR
RDFGMADRVLPTIPKEMRTRVAHFLEKQGFMQQALAVSTDSEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELATTKCQFVLAQECLHHAQDYGGLLLLATASGNANMVGKLAEGAE
RDGKTNVAFLTYFLQGKLDKCLELLIKTNRLPEAAFLARTYLPSHVSSVVKLWKESLGKV
NQKAADALANPTDYSNLFPGLREAFLAEDYLKETHVRLRPAAEYPLITRVPVTANIR
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgcctctccggttggacatcaagcggaagctgaccgctcggtcggaccgtgtgaagagt
gtggacctgcacccaactgaaccatggatggttgccagcctgtacaatggcagtgtctgt
gtctggaaccacgagacacagaccctggtgaagacatttgaggtgtgtgacctgcctgtg
agagtggctaagtttgtggcgaggaagcactgggtcattgctggagcagatgacatgcac
atccatgtgtttaactacaacactctggagagagctcacatgtttgaggcccactctgac
tacatccgctgtatcgcagtccacccaacacaaccttacatccttaccagcagtgatgac
atgctgatcaagctttgggactgggacaagaagtgggtgtgtggtcaggtgtttgagggc
cacacccactatgtcatgcagattgtcatcaaccctaaagacaacaaccagttcgccagc
gcctccctggacaggaccattaaggtgtggcagctgggatcttccgcccctaacttcact
ctggagggccatgagaaaggagtcaactgtatcgactactacagcggaggggacaagccc
tatcttatatcaggagctgacgaccgcctggtcaagatctgggactaccagaataagaca
tgtgtgcagactctagagggccatacccagaatgtgtcctgtgtcagctttcaccctgag
ctgccaatcatcctcacaggctccgaggacggcacagtgagagtctggcattccagcacg
taccgcctggaaaacacactgaactacgggatggaacgtgtgtggtgtgtgtgtggccag
cgaggcaccaacagtgtggcgctgggatatgatgaaggcagcatcatcatcaagttgggc
cgtgaggaaccagccatgtctatggactctaacggtaagatcatgtgggccaagcactct
gaggtgcagcaggccaacctgaaggccatgggagaggctgagatacaggacggagagagg
ctgtccctggccgtcaaagacatgggcagctgtgaaatctatccccagaccatccagcac
aaccccaatggcaggtttgtggtggtgtgtggggatggagagtacatcatctacactgca
atggccctgaggaacaagagctttggttcagcacaggagtttgtctggggccacgactcc
tcagagtatgctactcgggagagcaccagtatggtcaaaatcttcaagaacttcaaagaa
aataagtcttttaaaccagactttggggcagaaggtatccatggtgggttcttgctgggc
gtgaggtcagtgagtggtctggccttctacgattgggagaacacagaactggtccgccgc
attgagatcctgcctaaacacgtcttctggtcagagtctggggagctggtgtgtatcgcc
acggaggagtctttctttgtgctgcgctacctggctgagaaagtggcaacagcacaggag
accaaggagggagtcaccgaggatgggatagaggacgccttcgaggtgttgggtgagatt
caggaggtggtgaagacaggtctgtgggtgggagactgtttcatctacaccagctcagtc
aacagactcaattactacgtaggaggagaaattgtcaccgtcgcccacctggacaaaact
atgtacctgttgggctacatccctaaggatgaccgtctgtatctgggtgataaggagctg
aacatcgtcacttactctctgctggtgtcggtactggagtaccagactgctgtaatgagg
agggactttgggatggcagacagggtcctacccacaatccctaaagagatgaggaccagg
gttgcccactttttagagaaacagggtttcatgcagcaggccctggctgtgtccacagac
tcagaacacaggtttgagttggctctgcagctaggagaactgaagatcgcctaccagctg
gctgtagaggctgagtcggagcagaagtggaagcagttggcagagctggccactactaag
tgccagtttgtcctggcccaggagtgtctgcaccatgcccaggactatggggggctactg
ctgttggccacagcctcgggcaacgccaacatggtgggcaagctggcagagggggcagag
agagatggcaagaccaacgtggctttcctcacctatttcctccaggggaaactggacaaa
tgtctggagctcctcattaaaaccaaccggctgccagaggctgcattcctggccagaaca
tacctgcccagccatgtgtctagtgtggtgaagctgtggaaggagagcctggggaaggtg
aaccagaaggcagctgatgcattggccaaccctacagactacagcaacctgttccccggc
ctacgggaggccttcctggccgaagactacctcaaggagacccacgtcaggctgaggccc
gccgcagagtaccctctcatcacccgtgttccagttaccgccaatatccggtaa
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