Salvelinus namaycush (lake trout): 120019082
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Entry
120019082 CDS
T07522
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120019082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120019082
Spliceosome [BR:
snh03041
]
Complex C
Other components
Step II factors
120019082
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
WD_LRWD1
PQQ_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
120019082
NCBI-ProteinID:
XP_038818252
UniProt:
A0A8U0P4T8
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Position
Sna24:complement(21808650..21862485)
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AA seq
579 aa
AA seq
DB search
MAATVESLVSYGTDSDSDNETKSNASPEKVDPDALAHLQPLKSGQTMSLALLNSAPEVAV
KEAVETGVHLDPSLKEVTYNPTYETLFAPEFGPVNPYRSQQMAAPRNMLSGYAEPAHVND
FMFEQQRRTFSTFGYALDPSVDTTSQNSSNSYIGAVDEAEKKKGLTVFEVGPKKHDKRKK
VQGGESDDIDNYLGPWAKYVDEKDGAKPSEEEQKELDEITAKRQKKGRNEEEAPAEEKTI
LHVKDAYDYQGRSYLHVPQDVGINLRTADIPDKCYLPKKQIHVWTGHTKGVSAIRLFPVS
GHLLLSCSMDCKIKLWEVYNERRCVRTFIGHSKAVRDICFNNTGTQYMSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDARTGEVVQEYDRHLGA
VNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWKTT
KLYHRIKAHDKVCISALWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaccgtggagtccctcgtttcgtacgggaccgattcagattcagataatgag
acaaaatctaatgctagtcccgaaaaagttgaccctgatgccctagcacacctccaaccg
ttgaaatctgggcaaacaatgtctttagctctccttaattcagctcctgaggtcgccgta
aaggaggctgtggagactggtgtgcatctggacccctctctcaaagaggtcacctacaac
cccacatatgaaaccctgtttgcaccagagtttggtcctgtcaacccatatagaagtcaa
cagatggctgctcccaggaatatgctgtctggctatgcagagcctgctcacgtcaatgac
ttcatgtttgaacagcagaggaggaccttctccacctttggctatgctctggatccatct
gtggacacaacaagccagaattcctccaatagctacattggtgcagtggatgaggcagag
aaaaagaaaggattgactgtgtttgaggttggcccaaaaaaacatgacaagaggaaaaag
gtgcaaggaggtgaatcggatgacattgacaattaccttgggccctgggcgaaatacgtg
gacgaaaaggacggcgccaaaccatcagaggaggaacagaaggagctggatgagatcaca
gccaagaggcagaagaagggaaggaacgaggaagaggctccggcggaggagaagaccatt
ctccatgttaaagacgcgtatgactaccaagggaggtcttacctccacgtaccccaagac
gtgggtattaacctgcgtactgcagacataccagacaagtgttacctgcccaagaaacag
atccacgtctggactggacacaccaagggggtcagtgctatccgtctgtttcctgtatca
ggtcacctgctgctctcctgctctatggactgtaagatcaagttgtgggaggtgtataat
gagaggaggtgcgtacggacgtttatcggccacagtaaagcagtgcgggatatctgcttc
aacaacactgggactcagtacatgagtgcagcctacgaccgctacctcaaactttgggac
acagagacaggccagtgcatttcccgcttcacaaaccggaaggtgccgtactgcgtcaag
ttcaacccagatgaggacaagcagaaccttttcgtggctggcatgtctgataagaagatc
gttcagtgggacgcaaggacaggggaggtggttcaggagtatgaccgtcacctgggcgcg
gtcaacaccatcacgttcgtggatgagaaccgccgtttcgtcagcacgtcagatgacaag
tccctccgcgtgtgggagtgggacattcccgtggacttcaaatacatcgcagaacccagt
atgcactctatgcctgctgtaacactttcacccaatggtaagtggctggcctgccagtcc
atggacaatcagatcctgatatttggagcccagaaccgtttccgtctgaacaagaagaag
atcttcaagggccacatggtggctggctacgcctgccaggtggacttctccccagacatg
agctatgtggtgtctggcgatgcggatgggaagctgaatatctgggactggaagaccacc
aagctgtaccaccggatcaaggcccacgataaggtgtgcatcagtgccttgtggcacccc
cacgagacctccaaggtcatcacctgtggctgggacggactgatcaaactctgggactag
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