Salvelinus namaycush (lake trout): 120019126
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Entry
120019126 CDS
T07522
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120019126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120019126
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120019126
U7-dependent histone pre-mRNA processing factors
120019126
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
120019126
NCBI-ProteinID:
XP_038818327
UniProt:
A0A8U0P4Y4
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Position
24:complement(27079421..27091315)
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AA seq
796 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRTT
PGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKERMKKEAAKKLEQEKEVDVDSS
DESDMEDDLELPAVVKTKHHDLMMKGDGVRKGSFFKQAKKSYPMFPTHEERVKWDEYGEI
IRPEDFLVPELQATEEEKNKLESGMANGDEPMDQDSSSKVPTKCTSTTENLEIKARVTYI
DYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGVLPEEGMVKGEKGT
GEEVVEDSELAMDVTPADDATTDHSVVAQQRAMKTLFGEDVRELSEESDVIPTLEPLPAH
EIPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCD
DYYKIRELLYQQYAVV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctattatcaaactgactgctgtgtcaggggtgcaggaggagtctgccctctgc
tacctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagagcttc
tccatggacatcattgattccatgaaaaggtatgtccaccaggttgacgcggtgctcctc
tcccatcccgaccccctgcacctgggggccctgccctatgctgtgggcaagctggggcta
aactgccccatatatgccaccatccccgtctacaagatgggtcagatgttcatgtatgac
ctgtatcagtcgcgtaacaacactgaggacttcaacctgttcaccctggatgatgtggac
tgcgctttcgacaaaatccagcagttgaagtactcccagattgtcaatctgaaagggaaa
ggacatggtctgtccatcactccacttcctgctggtcacatgatcggagggaccatctgg
aagattgtgaaggatggggaggaggagattgtttacgctgtggacttcaaccacaaaaga
gagatccacctgaatgggtgtacgttggagtcggtgagtcgtccctctcttctcatcaca
gactcgttcaacgctacatacgtgcagccgcgtcgcaagcaaagggacgagcagctcctt
accaatgtaatggagaccctacgcggcgacggcaacgtgctgatcgcggtggatacggca
ggtcgtgtactggagctggctcagctgctggaccagatctggaggacgaaggatgccggg
ctgggggtctactctctggccctgctcaacaacgtcagctacaacgtggtggagttctct
aagtctcaggtggagtggatgagtgacaagctgatgcgctgcttcgaagacaagcgcaac
aaccccttccagttccgccacctgtccctgtgccacagcctggccgacctggcccgcgtg
cccagccccaaggtggtgctctgcagccagcccgacctggagtctggcttctcccgcgag
ctcttcatccaatggtgtcaggatgccaagaactctgtgatccttacctaccgtaccacg
cccggcaccctgggccgctacctcatcgacaaccccggggagaagatgctggacctggag
attaggaaacgggtgaagctggaaggcagagagctggaagaatacctggagaaagagaga
atgaagaaggaagctgccaaaaaacttgaacaagaaaaagaggtggacgtggactcgagt
gatgagagcgacatggaggatgacctggagctgccggcggtggtgaaaaccaaacaccac
gatctcatgatgaagggagacggcgtccgcaagggcagcttcttcaaacaggccaagaag
tcttaccccatgttccccacccacgaggagagggtcaaatgggatgagtacggagagatc
atcagaccggaggacttcctggtaccagagctccaggccactgaggaggagaagaacaag
ctggagtcgggcatggccaacggggacgaacccatggaccaggactcctcatccaaagta
cccaccaagtgtacctccactacggagaacctagagatcaaagccagggtaacttacatc
gactacgagggccgctcggacggcgactccatcaagaagatcattaaccaaatgaagccg
cggcagctggtgatcgtgcacggcccccccgaggccagcttggacctggccgagtcctgc
aaggccttcaccaaggacatcaaggtctacacgcccaagctgcaggagactgtggacgcc
accagtgagacacacatttaccaggtgcggttgaaagactcactggtgagctcgctgcag
ttctgccgcgccaaggacacagagctggcgtggatcgacggcgtactggacatgcgcgtg
gtcaaggtggacacaggcgtgctgcctgaggagggcatggtgaaaggcgagaagggaact
ggcgaggaggttgtggaagacagcgagctggccatggacgtgacccctgctgacgatgcc
accacagaccatagcgtggtggcgcagcagcgcgccatgaagacgttgtttggcgaggat
gtgcgcgagctgtcggaggagagtgatgtcatccctaccctggagcctctgcctgcccac
gagatcccaggccaccagtcagtgtttatcaacgagccgcgcctgtccgacttcaagcag
gtactgctgagggagggcatccaggctgagtttgtgggaggagtgctggtgtgtaacaac
atggtggccgtccgcaggacggaggcggggcgcatcggcctggaaggatgcctgtgtgat
gactattataagatccgtgagctgctgtatcagcagtatgctgtggtgtag
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