KEGG   Salvelinus namaycush (lake trout): 120019515
Entry
120019515         CDS       T07522                                 
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03082  ATP-dependent chromatin remodeling
snh03083  Polycomb repressive complex
snh04110  Cell cycle
snh04330  Notch signaling pathway
snh04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    120019515
   03083 Polycomb repressive complex
    120019515
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    120019515
   04350 TGF-beta signaling pathway
    120019515
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    120019515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:snh03036]
    120019515
Enzymes [BR:snh01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     120019515
Chromosome and associated proteins [BR:snh03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     120019515
   HDAC complexes
    Sin3A-HDAC complex
     120019515
    BRAF-HDAC complex
     120019515
    REST complex
     120019515
    SHIP complex
     120019515
    MiDAC complex
     120019515
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     120019515
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    120019515
  Chromatin remodeling factors
   NuRD complex
    120019515
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 120019515
NCBI-ProteinID: XP_038818740
UniProt: A0A8U0P5X1
LinkDB
Position
24:9085789..9093987
AA seq 467 aa
MAYTVAGGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEITKYHSDDYIQFLQSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSA
AGSVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGVDDESYE
LIFRPVMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYIKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTEIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTLEY
MDKIKQRLFENLRMLPHAPGVQMQTVPEDAITDDTVDEDAEDPDKRMSIRASDKRIACDE
EFSDSEDEGEGGRRNEANHKKGTKRTRVEEEEKVEVEKLKETSTELT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggcttacaccgttgcaggtggaaccaagaagaaagtctgctactactatgacggtgac
attggcaattactattatggacaagggcatcccatgaaaccacaccgaattcgaatgacc
cacaacctactgttgaactatggactgtacagaaaaatggaaatatatagaccacacaaa
gccactgcagaggaaattaccaaataccacagtgacgattacatccagttcctccaatcc
atacgaccagacaacatgtcagagtacagcaagcaaatgcagaggtttaatgttggtgag
gattgtcctgtatttgatgggttgtttgagttctgccagttgtctaccggtggctctgct
gcgggatcggtgaaactcaacaggcagcagacggacattgcggtgaactgggccggtgga
ctccatcacgctaagaagtctgaggcctctggcttctgttacgtcaatgacatcgtgttg
gccattctggagctcctcaagtaccatcagagggtactgtacgtagatattgacatccac
catggggatggagtagaggaagccttctacaccacagaccgggtcatgactgtgtccttc
cacaaatatggagagtacttccccgggactggagacctcagggatattggtgctggaaaa
ggcaaatactacgcagtcaacttccccctgagggacggcgttgacgatgagtcgtatgag
ctgatcttcaggcctgtgatggccaaggtgatggagatgtaccagcccagtgcagtggtt
ctgcaatgtggagcagactccctctcaggagaccgactgggctgcttcaacctcaccatc
cgcggccatgctaagtgtgttgagtacattaagtcattcaaccttcccctgctaatgctg
ggtggaggaggctacaccatccgcaacgtggcccgctgctggacctacgaaacggccgtg
gctctggatactgagatccctgacgaactgccgtacaatgattactttgagtactttggg
cctgacttcaagttgcacatcagcccatccaacatgaccaaccagaacacattggagtac
atggataagatcaagcagcgtctgtttgagaacttgcgcatgctacctcacgccccggga
gtgcagatgcagacggtccctgaggacgccatcactgacgatacagtggatgaggatgca
gaggaccccgacaaacgcatgtccatccgtgcttcagacaagaggatagcctgcgacgag
gagttctccgactctgaggacgagggagagggaggaaggaggaacgaagccaatcacaag
aagggaacaaaacggactcgagttgaggaggaagagaaagttgaggtggagaaattgaag
gaaacaagcacagaactgacataa

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