Salvelinus namaycush (lake trout): 120019528
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Entry
120019528 CDS
T07522
Name
(RefSeq) denticleless protein homolog
KO
K11790
denticleless
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120019528
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120019528
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_DCAF4
ANAPC4_WD40
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_SCAP
WDR54
TAF1C_beta-prop
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
120019528
NCBI-ProteinID:
XP_038818752
UniProt:
A0A8U0P6D3
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Position
Sna24:1272262..1281281
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AA seq
663 aa
AA seq
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MLFRSIVDRGVRKRRRNDLSPKYPLSSLLDGYQCARHDEHISYGNMGVAVPPFGCAFSTA
RGLQSVFAVANEEGVLRLYNTDNRQSPVLKEWMAHENAVFDVAWVPGEASLVTASGDQMA
KLWDVTSGELLGSFKGHQCSLKSVAFTQQEKAVFCTGGRDGNIMVWDTRCSKKDGFYRQV
KQISGAHNKMDRNTPSNAKKRRPGTRGMSPSVDSQQSVTVVLFRDAHTLISSGAVDGVIK
TWDLRKNYTAYNHDPIPLQVYPYPGSSTRKLGYSGMVLDSTGSNLFSNCIDDNIYMFNVS
GLKTTPVAVFAGHLNSSFYVKSTVSPDDQFLASGSSDHHTYIWKISDPKQAPMMLQGHNQ
EVTSVAWCPTDFTKIASCSDDNTVRIWRLDRGTDGAKSSVGEANLVGWACPKPATTVSIP
RPLNHVESTTAKSPQAGSLGALSSPQPAACAQGRADVPLPSSTSTLQAQGAKATLLCQKT
SSSIRNWFSRTPMSPWEQVTSPLHTVLSPQSTTGTAPSGRRAKRRLETADCGAAGGCKGA
GECNCVTELYPAAKSSRGLAGMCCPSQEPPQAGTERSEAWGGADLQVEDPSTQADKENHF
PGGADWLSVMSQRLMKGVGNTSSIPRSPSACKRRDGRMPTSPAMRSPRSMQKISSYFQQK
TSE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgctttttcgctccattgttgacagaggagtccgtaaacggaggcgaaatgacctcagc
ccaaagtacccgttgtcctctctgctggacggctaccagtgtgcacggcatgatgaacac
atctcatacgggaacatgggggtagccgtgccgccttttggatgcgccttctctacagct
cgagggttgcagagtgtatttgctgtggccaacgaggagggtgtcttgaggctctacaac
acagataacagacagagtccagtcctgaaagaatggatggcgcacgagaatgctgtcttt
gacgttgcttgggtgccaggggaggctagcttggtgactgcatcaggtgatcagatggcc
aagctgtgggacgtgacatcgggggaactccttggcagcttcaaggggcaccagtgcagc
ctcaagtcggttgcattcacacagcaggagaaagctgtgttctgtactgggggccgagat
gggaatattatggtctgggacaccaggtgcagcaaaaaagatggattctacaggcaggtg
aagcagatcagcggggctcacaataagatggatagaaacacaccctctaacgcgaagaag
agacgcccaggcacacgcggcatgtccccctctgtggactcccagcagagtgtcaccgtg
gtgctgttccgtgatgcacacaccctcatctcttcaggagctgttgatggggtaatcaag
acgtgggaccttcggaaaaactacactgcctacaaccacgaccccataccactccaggtg
tacccgtacccaggctccagcacacggaaactaggttactcggggatggtgttggactcc
accggctccaacctgttttccaactgcatcgacgacaacatctacatgttcaacgtcagt
ggattgaaaaccactccagtggcagtcttcgctggtcacctcaactcctcgttttacgtc
aagtccactgttagcccagacgaccagttcctggctagtggctcaagtgaccatcataca
tacatctggaagatctctgacccaaagcaggctcctatgatgcttcagggccataaccag
gaagtgacctccgtagcgtggtgcccaacagatttcacaaagattgcttcctgctctgac
gacaacaccgtacggatctggcgtctggaccgggggacggatggagcaaagtcctctgtt
ggagaggccaatctggtgggctgggcatgtcccaaacctgccaccaccgtgtccattcca
aggcctttgaatcacgtggagtccaccacagccaagagtccccaggcagggagtctgggg
gccctgtcctccccccagcctgccgcctgcgcccaaggtagagccgatgtacctctaccc
tccagcacctccactcttcaggcccagggtgctaaggccaccctcctatgccagaaaaca
tcctcctccatcaggaactggttttcccgaacccctatgtctccttgggaacaggtcacc
tctcctctccacacggtgctcagcccccagagcacaaccggtactgctccctcggggagg
agggccaagcgccgactggagacggctgactgtggggcagcagggggctgcaaaggtgca
ggggagtgcaactgcgttacggagctctaccccgcagccaagagcagccggggactggca
ggcatgtgctgccccagccaggagccacctcaggcgggcacagagaggagtgaggcctgg
ggaggagcggacctccaggtggaggacccatccacacaggcagacaaggagaaccacttt
ccaggtggggcagattggttgtcagtgatgagccagaggctgatgaaaggtgtgggaaac
accagcagcattcccagaagccccagtgcctgcaagaggcgagatggcaggatgcccacc
tcaccggcaatgcgctcaccacgatccatgcagaaaatatcctcctacttccagcaaaag
acttcggagtaa
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