Salvelinus namaycush (lake trout): 120020056
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Entry
120020056 CDS
T07522
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120020056
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120020056
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120020056
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
120020056
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
120020056
NCBI-ProteinID:
XP_038819420
UniProt:
A0A8U0P6X1
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Position
Sna25:complement(7478341..7495576)
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AA seq
503 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLVLGMSRDAVKFGRMSKKQRDSLYAEVQKHQKNQECLNQGLSLSREDVAG
GESKGDRHGDLSRSYSSGGSSSTLSDLDDIAALPKLFDLPLTPQEAHEYCSLELQEDHGG
STGNTSNSSSPSSSSPISSNQNSPQQNLLDVTDANGIKHEYQMLSHTHTLLAHTHATLLE
TLPDDCTLMDIERITQSVVKSHLETSQYSSDDLKRLTYNRMQYSPEETRNFQCESAESVW
QQCAHHITNSIQYVVEFAKRITGFMDLCQNDQIILLKAGCLEVLLIRMCRAFNATTNTMF
FDGKFASAQLFKALGCDDLVSAVFDLAKGLSRLQLTDEEMALFSAAVLLSPDRPWLADSQ
KVQKLQAKVYLALQHSLHMSGAADEKLDQMVSKLPIMKSICNLHIDKLEFFRLVHPETAY
SFPPLYREVFGSEISLPDSTNNS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatagaagtaataccctgcaagatctgtggggacaagtcctcaggaatc
cactatggagttattacctgtgaaggctgcaaggggttcttccgccgcagccagcagaac
aatgccatgtattcgtgttcccgccagaggaactgtcttattgaccgaaccaaccgcaac
cgctgccaacactgcagactgcagaagtgtctggtgttaggcatgagccgggacgcggtg
aagtttggccgtatgtctaagaagcagcgcgacagcctgtacgctgaggtccagaagcac
cagaagaaccaggagtgtctgaaccagggtctgtcactgtccagggaagacgtggctggg
ggagaaagcaagggggacaggcacggggatctcagtcgctcctacagcagcgggggctcc
agctccaccctgagtgacctggatgacatcgcagcgctccccaaactgtttgacctcccc
ttgaccccacaggaggcccacgagtactgcagcctggagctgcaagaagaccacggcgga
agcactgggaacacctccaattcttcatcaccatcatcatcctcgcccatttcgtccaat
cagaattctccccagcaaaatctactggatgtcaccgacgccaatgggatcaaacacgag
taccagatgttgtcgcacacacacacgctcctggcacacacacacgccacactgctagag
acactgcctgatgactgcactcttatggatatagagcgtatcacccagagtgtggtcaag
tcccacttggagacgagtcagtacagctctgacgacctgaagaggctgacatacaatcgg
atgcagtactcacctgaggagactcgcaacttccagtgcgagtctgcagagtctgtgtgg
cagcaatgtgcccaccacatcaccaattccatccagtacgtggtggagtttgccaaacgc
attacaggcttcatggacctgtgtcagaatgaccagattattctgctcaaagcaggctgt
ctggaggtgctgttgattaggatgtgcagggcatttaacgccaccaccaacaccatgttc
tttgatggcaaatttgcctccgctcagctcttcaaagccctcggttgcgatgacttggtc
agtgccgtgtttgacctggctaaagggctctcccgcctgcagctgaccgatgaggagatg
gctctgttcagcgccgctgtccttctgtccccagaccgaccatggttagccgacagccag
aaggtccagaagctacaggcgaaggtctacctggctctgcaacacagtctgcacatgagc
ggagctgccgacgagaagctagaccagatggtatccaagctgccgataatgaagtccatc
tgtaatctccacatcgacaagctggagttctttcgtctggtccaccccgagaccgcatac
agcttcccaccactctaccgggaagtgtttgggagtgagatctctctccccgactctaca
aacaactcctag
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